Variant report

Variant	rs12672237
Chromosome Location	chr7:38756025-38756026
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs1017028	0.85[ASN][1000 genomes]
rs10242048	0.85[ASN][1000 genomes]
rs10247503	0.88[ASN][1000 genomes]
rs10251912	0.88[ASN][1000 genomes]
rs10254567	0.88[ASN][1000 genomes]
rs10271176	0.88[ASN][1000 genomes]
rs10486677	0.90[ASN][1000 genomes]
rs10486678	0.89[ASN][1000 genomes]
rs11971020	0.90[ASN][1000 genomes]
rs11979618	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11979824	0.90[ASN][1000 genomes]
rs12533557	0.88[ASN][1000 genomes]
rs12667567	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12672750	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12672793	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12672885	0.89[ASN][1000 genomes]
rs12701659	0.95[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1468348	0.97[ASN][1000 genomes]
rs17700072	0.94[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs17700142	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17700172	0.97[ASN][1000 genomes]
rs17700190	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17700262	0.90[ASN][1000 genomes]
rs17700392	0.90[ASN][1000 genomes]
rs17767695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17767770	0.97[ASN][1000 genomes]
rs17767818	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17768153	0.88[ASN][1000 genomes]
rs17768212	0.90[ASN][1000 genomes]
rs1859494	0.95[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1978171	0.96[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1978172	0.95[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2074655	0.90[ASN][1000 genomes]
rs2074657	0.89[ASN][1000 genomes]
rs2107743	0.88[ASN][1000 genomes]
rs2189855	0.90[ASN][1000 genomes]
rs2214666	0.90[ASN][1000 genomes]
rs2240351	0.88[ASN][1000 genomes]
rs2240352	0.88[ASN][1000 genomes]
rs2240353	0.90[ASN][1000 genomes]
rs2240354	0.88[ASN][1000 genomes]
rs2286082	0.87[ASN][1000 genomes]
rs2286084	0.90[ASN][1000 genomes]
rs2286087	0.90[ASN][1000 genomes]
rs2286088	0.90[ASN][1000 genomes]
rs2286091	0.90[ASN][1000 genomes]
rs2286094	0.89[ASN][1000 genomes]
rs2286098	0.90[ASN][1000 genomes]
rs2286104	0.90[ASN][1000 genomes]
rs2286105	0.90[ASN][1000 genomes]
rs2286106	0.88[ASN][1000 genomes]
rs2286109	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2392598	0.88[ASN][1000 genomes]
rs28548028	0.88[ASN][1000 genomes]
rs35253728	0.95[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs35791079	0.93[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs3735347	0.96[ASN][1000 genomes]
rs3801139	0.88[ASN][1000 genomes]
rs3801140	0.88[ASN][1000 genomes]
rs3801141	0.90[ASN][1000 genomes]
rs3801143	0.88[ASN][1000 genomes]
rs3801145	0.86[ASN][1000 genomes]
rs3801146	0.88[ASN][1000 genomes]
rs4723782	0.88[ASN][1000 genomes]
rs4723785	0.88[ASN][1000 genomes]
rs56050717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57091471	0.90[ASN][1000 genomes]
rs60590111	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62444078	0.88[ASN][1000 genomes]
rs62444107	0.90[ASN][1000 genomes]
rs6462860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66662538	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66796288	0.95[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs66976998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67202646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs733150	0.88[ASN][1000 genomes]
rs73368205	0.88[ASN][1000 genomes]
rs7778570	0.96[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7779329	0.95[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7783546	0.99[ASN][1000 genomes]
rs7785911	0.88[ASN][1000 genomes]
rs7786389	0.90[ASN][1000 genomes]
rs7794030	0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7795874	0.87[ASN][1000 genomes]
rs7797871	0.98[ASN][1000 genomes]
rs886646	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887965	chr7:38706384-38793243	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38748800-38756200	Weak transcription	Fetal Brain Female	brain
2	chr7:38749000-38803600	Weak transcription	Fetal Brain Male	brain
3	chr7:38754200-38758200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:38754200-38760600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:38754600-38759800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:38754600-38760800	Weak transcription	GM12878-XiMat	blood
7	chr7:38755000-38791200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr7:38755600-38760800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr7:38755800-38771600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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