Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:21788294..21791321-chr7:21795182..21798841,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10156149	1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10241767	0.85[CHB][hapmap]
rs10485976	0.90[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs16872905	1.00[CEU][hapmap]
rs17145154	1.00[CEU][hapmap]
rs17145200	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17145214	1.00[CEU][hapmap];0.80[CHB][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17145249	1.00[CEU][hapmap];0.90[CHB][hapmap];0.80[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17145261	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17145274	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17145312	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs17354984	1.00[CEU][hapmap]
rs1989904	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs1989906	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs2072222	1.00[CEU][hapmap]
rs2965362	1.00[CEU][hapmap]
rs2965363	1.00[CEU][hapmap]
rs56881851	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57038242	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67536067	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7793192	0.95[CHB][hapmap];0.87[JPT][hapmap];0.80[ASN][1000 genomes]
rs7796262	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1016063	chr7:21740433-21808410	Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21782600-21798000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:21789400-21804800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:21793400-21797600	Weak transcription	Gastric	stomach
4	chr7:21794200-21797800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr7:21795000-21804200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr7:21795000-21805200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:21796000-21797800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr7:21796400-21797800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr7:21796600-21810000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr7:21797200-21797600	Flanking Active TSS	Fetal Heart	heart
11	chr7:21797200-21797800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:21797200-21798000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr7:21797200-21798600	Enhancers	HepG2	liver
14	chr7:21797400-21797600	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr7:21797400-21797600	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr7:21797400-21797600	Bivalent Enhancer	Fetal Lung	lung

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