Variant report

Variant	rs17145249
Chromosome Location	chr7:21794715-21794716
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:21783977..21786410-chr7:21794343..21796090,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10156149	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10485976	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.83[ASN][1000 genomes]
rs12672447	1.00[CEU][hapmap];0.90[CHB][hapmap];0.80[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16872905	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs17145154	1.00[CEU][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap]
rs17145200	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17145214	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17145261	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17145274	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17145312	0.84[CHB][hapmap]
rs17354984	1.00[CEU][hapmap]
rs1989904	0.84[CHB][hapmap];1.00[MKK][hapmap]
rs1989906	0.84[CHB][hapmap]
rs2072222	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2965362	1.00[CEU][hapmap];0.80[JPT][hapmap]
rs2965363	1.00[CEU][hapmap];0.80[JPT][hapmap]
rs56881851	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57038242	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67536067	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7793192	0.84[CHB][hapmap];1.00[MKK][hapmap]
rs7796262	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1016063	chr7:21740433-21808410	Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21782600-21798000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:21789400-21804800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:21793400-21797600	Weak transcription	Gastric	stomach
4	chr7:21794200-21795000	Enhancers	H1 Cell Line	embryonic stem cell
5	chr7:21794200-21795000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr7:21794200-21797800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr7:21794400-21795000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr7:21794400-21795000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr7:21794400-21795000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr7:21794400-21795600	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr7:21794600-21795000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr7:21794600-21795000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr7:21794600-21795000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:21794600-21795000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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