Variant report

Variant	rs12673046
Chromosome Location	chr7:117860677-117860678
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:117858675..117860839-chr7:117870370..117872666,2	K562	blood:
2	chr7:117858469..117860839-chr7:117870370..117873011,3	K562	blood:
3	chr7:117860248..117861812-chr7:117862907..117865747,2	K562	blood:

Variant related genes	Relation type
ENSG00000106013	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10226152	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10227326	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10229589	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10267938	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10487390	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1054032	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1061731	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11486992	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11543742	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11770353	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11979012	0.82[EUR][1000 genomes]
rs12667103	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13224733	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2058416	0.80[EUR][1000 genomes]
rs2058417	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2191920	0.80[EUR][1000 genomes]
rs2402322	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2896242	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3802012	0.81[EUR][1000 genomes]
rs4141028	0.81[EUR][1000 genomes]
rs41900	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs41901	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs41902	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs41905	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs41906	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs41909	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs5002233	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6466650	0.80[EUR][1000 genomes]
rs6944524	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6946855	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6948096	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6964911	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6965144	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7796145	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7796148	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7797855	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9655829	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs979652	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs989899	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv889088	chr7:117744660-117913648	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117859200-117860800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links