Variant report

Variant	rs6466650
Chromosome Location	chr7:117852558-117852559
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10085904	0.81[EUR][1000 genomes]
rs10226152	0.84[EUR][1000 genomes]
rs10227326	0.84[EUR][1000 genomes]
rs10229589	0.84[EUR][1000 genomes]
rs10487390	0.84[EUR][1000 genomes]
rs1054032	0.84[EUR][1000 genomes]
rs1061731	0.84[EUR][1000 genomes]
rs10953864	0.80[EUR][1000 genomes]
rs1117254	0.81[EUR][1000 genomes]
rs11486992	0.84[EUR][1000 genomes]
rs11543742	0.84[EUR][1000 genomes]
rs11770353	0.81[EUR][1000 genomes]
rs11979012	0.82[EUR][1000 genomes]
rs12537795	0.80[EUR][1000 genomes]
rs12673046	0.80[EUR][1000 genomes]
rs13224733	0.83[EUR][1000 genomes]
rs2058416	0.81[EUR][1000 genomes]
rs2058417	0.83[EUR][1000 genomes]
rs2191920	0.81[EUR][1000 genomes]
rs2402322	0.84[EUR][1000 genomes]
rs2896242	0.84[EUR][1000 genomes]
rs3802012	0.82[EUR][1000 genomes]
rs4141028	0.82[EUR][1000 genomes]
rs5002233	0.84[EUR][1000 genomes]
rs6944524	0.84[EUR][1000 genomes]
rs6946855	0.83[EUR][1000 genomes]
rs6948096	0.84[EUR][1000 genomes]
rs6956486	0.80[EUR][1000 genomes]
rs6964911	0.83[EUR][1000 genomes]
rs6965144	0.84[EUR][1000 genomes]
rs7796145	0.84[EUR][1000 genomes]
rs7796148	0.84[EUR][1000 genomes]
rs7797855	0.84[EUR][1000 genomes]
rs9655829	0.84[EUR][1000 genomes]
rs9656260	0.80[EUR][1000 genomes]
rs979652	0.84[EUR][1000 genomes]
rs989899	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv889088	chr7:117744660-117913648	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6466650	LSM8	cis	multi-tissue	Pritchard

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117833000-117854000	Weak transcription	HSMM	muscle
2	chr7:117833600-117854000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr7:117852200-117852600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:117852400-117854000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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