Variant report

Variant	rs12673261
Chromosome Location	chr7:14789643-14789644
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10241439	0.88[AMR][1000 genomes]
rs10249582	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10253369	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10257298	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10277424	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12670025	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17168389	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17168390	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17168419	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17168437	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9886266	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv887712	chr7:14717872-14829858	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14785800-14792200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr7:14787400-14792200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:14787400-14801400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr7:14787800-14792000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr7:14788200-14793600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:14788400-14794200	Weak transcription	HMEC	breast
7	chr7:14788600-14793800	Weak transcription	Osteobl	bone
8	chr7:14788600-14794400	Weak transcription	NHDF-Ad	bronchial
9	chr7:14788800-14793600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr7:14789000-14791000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:14789400-14790000	Weak transcription	Brain Germinal Matrix	brain
12	chr7:14789400-14790600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr7:14789600-14790600	Weak transcription	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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