Variant report

Variant	rs17168389
Chromosome Location	chr7:14793696-14793697
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10230585	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap]
rs10241439	0.86[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes]
rs10249582	1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10253369	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10257298	0.85[EUR][1000 genomes]
rs10272351	0.91[CEU][hapmap];0.81[JPT][hapmap]
rs10277424	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12670025	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12673261	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17168390	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17168419	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17168437	1.00[CEU][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17168451	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap]
rs2358068	0.81[CEU][hapmap]
rs6971441	0.83[CEU][hapmap]
rs9886266	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv887712	chr7:14717872-14829858	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv1020722	chr7:14792114-14871907	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14787400-14801400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr7:14788400-14794200	Weak transcription	HMEC	breast
3	chr7:14788600-14793800	Weak transcription	Osteobl	bone
4	chr7:14788600-14794400	Weak transcription	NHDF-Ad	bronchial
5	chr7:14791400-14793800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:14791600-14793800	Weak transcription	HUVEC	blood vessel
7	chr7:14792800-14794200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:14792800-14794200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr7:14793000-14794200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr7:14793600-14793800	Enhancers	H1 Cell Line	embryonic stem cell
11	chr7:14793600-14793800	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr7:14793600-14794000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:14793600-14794600	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr7:14793600-14794600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr7:14793600-14794800	Enhancers	Muscle Satellite Cultured Cells	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links