Variant report

Variant	rs12673582
Chromosome Location	chr7:105480906-105480907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:105470129..105472971-chr7:105479942..105482901,2	MCF-7	breast:
2	chr7:105467716..105469978-chr7:105478235..105481087,2	MCF-7	breast:
3	chr7:105480095..105482542-chr7:105492125..105494142,2	K562	blood:
4	chr7:105471516..105474316-chr7:105479305..105481935,2	MCF-7	breast:
5	chr7:105475286..105478263-chr7:105479596..105482018,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12672355	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2158896	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2190449	0.98[EUR][1000 genomes]
rs2392642	0.81[ASN][1000 genomes]
rs2392643	0.83[ASN][1000 genomes]
rs2893575	0.83[ASN][1000 genomes]
rs2893576	0.81[ASN][1000 genomes]
rs4730109	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4730111	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4730112	0.98[EUR][1000 genomes]
rs59968213	0.98[EUR][1000 genomes]
rs60969020	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6948917	0.82[ASN][1000 genomes]
rs73193826	0.97[EUR][1000 genomes]
rs73193830	0.98[EUR][1000 genomes]
rs73193837	0.97[EUR][1000 genomes]
rs73193838	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs997438	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027213	chr7:105438610-106022869	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105465400-105506600	Weak transcription	Fetal Intestine Large	intestine
2	chr7:105471800-105483600	Weak transcription	Pancreas	Pancrea
3	chr7:105471800-105484000	Weak transcription	Primary T cells from cord blood	blood
4	chr7:105472400-105489800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr7:105473000-105494400	Weak transcription	Fetal Lung	lung
6	chr7:105473200-105490000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr7:105473400-105484400	Weak transcription	Hela-S3	cervix
8	chr7:105473800-105481000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr7:105478000-105481000	Enhancers	Lung	lung
10	chr7:105478000-105481800	Enhancers	Fetal Muscle Trunk	muscle
11	chr7:105478000-105482200	Enhancers	Rectal Smooth Muscle	rectum
12	chr7:105478400-105481000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr7:105478400-105481600	Weak transcription	Psoas Muscle	Psoas
14	chr7:105478600-105482000	Enhancers	NHEK	skin
15	chr7:105478600-105483200	Enhancers	HMEC	breast
16	chr7:105478600-105483400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr7:105478800-105482600	Enhancers	NHLF	lung
18	chr7:105478800-105484200	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr7:105479000-105481600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr7:105479000-105482200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr7:105479000-105483400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr7:105479200-105481000	Enhancers	Fetal Brain Female	brain
23	chr7:105479200-105481800	Enhancers	Fetal Thymus	thymus
24	chr7:105479200-105482600	Enhancers	Esophagus	oesophagus
25	chr7:105479400-105481000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr7:105479400-105481200	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr7:105479400-105482000	Weak transcription	Colonic Mucosa	Colon
28	chr7:105479400-105482200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr7:105479400-105482400	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr7:105479400-105483800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr7:105479400-105490000	Weak transcription	NHDF-Ad	bronchial
32	chr7:105479400-105494400	Weak transcription	Brain Angular Gyrus	brain
33	chr7:105479600-105481400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr7:105479600-105483600	Weak transcription	Fetal Intestine Small	intestine
35	chr7:105479600-105487600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr7:105479600-105489600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr7:105479600-105489600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr7:105479600-105489800	Weak transcription	HSMM	muscle
39	chr7:105479600-105494400	Weak transcription	Fetal Kidney	kidney
40	chr7:105479600-105506200	Weak transcription	Duodenum Mucosa	Duodenum
41	chr7:105479800-105482600	Enhancers	Colon Smooth Muscle	Colon
42	chr7:105479800-105489800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr7:105480000-105481400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr7:105480000-105481600	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr7:105480000-105481600	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr7:105480000-105481600	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr7:105480000-105482000	Weak transcription	Spleen	Spleen
48	chr7:105480000-105483800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr7:105480000-105487600	Weak transcription	Aorta	Aorta
50	chr7:105480000-105489000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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