Variant report

Variant	rs2158896
Chromosome Location	chr7:105479795-105479796
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:105467716..105469978-chr7:105478235..105481087,2	MCF-7	breast:
2	chr7:105471516..105474316-chr7:105479305..105481935,2	MCF-7	breast:
3	chr7:105475286..105478263-chr7:105479596..105482018,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12672355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12673582	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2190449	0.98[EUR][1000 genomes]
rs2392642	0.83[ASN][1000 genomes]
rs2392643	0.85[ASN][1000 genomes]
rs2893575	0.85[ASN][1000 genomes]
rs2893576	0.83[ASN][1000 genomes]
rs4730109	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4730111	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730112	0.84[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs59968213	0.98[EUR][1000 genomes]
rs60969020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6948917	0.84[ASN][1000 genomes]
rs73193826	0.97[EUR][1000 genomes]
rs73193830	0.84[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs73193837	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73193838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs997438	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027213	chr7:105438610-106022869	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105465400-105506600	Weak transcription	Fetal Intestine Large	intestine
2	chr7:105471600-105479800	Weak transcription	Gastric	stomach
3	chr7:105471800-105483600	Weak transcription	Pancreas	Pancrea
4	chr7:105471800-105484000	Weak transcription	Primary T cells from cord blood	blood
5	chr7:105472400-105489800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr7:105473000-105494400	Weak transcription	Fetal Lung	lung
7	chr7:105473200-105490000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr7:105473400-105484400	Weak transcription	Hela-S3	cervix
9	chr7:105473800-105480400	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr7:105473800-105481000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr7:105477400-105480000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr7:105477600-105480800	Enhancers	Fetal Brain Male	brain
13	chr7:105477800-105480000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr7:105478000-105480000	Enhancers	Brain Substantia Nigra	brain
15	chr7:105478000-105480000	Enhancers	Fetal Heart	heart
16	chr7:105478000-105480000	Enhancers	Left Ventricle	heart
17	chr7:105478000-105480000	Enhancers	Right Ventricle	heart
18	chr7:105478000-105480400	Enhancers	Fetal Muscle Leg	muscle
19	chr7:105478000-105481000	Enhancers	Lung	lung
20	chr7:105478000-105481800	Enhancers	Fetal Muscle Trunk	muscle
21	chr7:105478000-105482200	Enhancers	Rectal Smooth Muscle	rectum
22	chr7:105478200-105480000	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr7:105478200-105480200	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr7:105478400-105480000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr7:105478400-105480000	Enhancers	Muscle Satellite Cultured Cells	--
26	chr7:105478400-105480000	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr7:105478400-105480400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr7:105478400-105481000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr7:105478400-105481600	Weak transcription	Psoas Muscle	Psoas
30	chr7:105478600-105479800	Flanking Active TSS	Colon Smooth Muscle	Colon
31	chr7:105478600-105480000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr7:105478600-105480000	Enhancers	NH-A	brain
33	chr7:105478600-105482000	Enhancers	NHEK	skin
34	chr7:105478600-105483200	Enhancers	HMEC	breast
35	chr7:105478600-105483400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr7:105478800-105479800	Enhancers	Fetal Stomach	stomach
37	chr7:105478800-105480000	Enhancers	Brain Anterior Caudate	brain
38	chr7:105478800-105480000	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr7:105478800-105480000	Enhancers	Spleen	Spleen
40	chr7:105478800-105480200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr7:105478800-105480600	Enhancers	H9 Cell Line	embryonic stem cell
42	chr7:105478800-105480600	Enhancers	Brain Cingulate Gyrus	brain
43	chr7:105478800-105482600	Enhancers	NHLF	lung
44	chr7:105478800-105484200	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr7:105479000-105479800	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr7:105479000-105480000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr7:105479000-105480000	Enhancers	Brain Hippocampus Middle	brain
48	chr7:105479000-105480200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
49	chr7:105479000-105480800	Enhancers	HUES64 Cell Line	embryonic stem cell
50	chr7:105479000-105481600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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