Variant report

Variant	rs12677456
Chromosome Location	chr8:8832086-8832087
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:8825033..8827497-chr8:8830401..8832914,2	K562	blood:
2	chr8:8829651..8832164-chr8:8833894..8836352,2	K562	blood:

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10113609	0.80[ASN][1000 genomes]
rs1025394	0.80[ASN][1000 genomes]
rs1036081	0.90[EUR][1000 genomes]
rs12681075	0.93[JPT][hapmap];0.91[EUR][1000 genomes]
rs12682403	0.88[EUR][1000 genomes]
rs13265205	0.86[ASN][1000 genomes]
rs17155071	0.93[JPT][hapmap];0.86[EUR][1000 genomes]
rs2044388	0.81[JPT][hapmap]
rs2082210	0.93[JPT][hapmap]
rs2084076	1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs2288669	1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs2288670	0.81[EUR][1000 genomes]
rs2288671	0.92[JPT][hapmap]
rs2288672	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs2409117	0.83[ASN][1000 genomes]
rs2409118	0.85[ASN][1000 genomes]
rs2409119	0.92[JPT][hapmap];0.84[EUR][1000 genomes]
rs28693452	0.90[EUR][1000 genomes]
rs2915248	0.82[EUR][1000 genomes]
rs2915251	0.93[JPT][hapmap]
rs2915252	0.92[JPT][hapmap];0.83[EUR][1000 genomes]
rs2915253	0.82[EUR][1000 genomes]
rs2921379	0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs2953800	0.93[JPT][hapmap];0.82[EUR][1000 genomes]
rs2953801	0.82[EUR][1000 genomes]
rs2953808	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2956242	0.92[JPT][hapmap];0.81[EUR][1000 genomes]
rs2956243	0.92[JPT][hapmap];0.81[EUR][1000 genomes]
rs2956244	0.90[JPT][hapmap]
rs2979246	0.92[JPT][hapmap]
rs2979256	0.93[JPT][hapmap]
rs2979260	1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs2979261	1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs2979262	0.81[ASN][1000 genomes]
rs2979263	0.93[JPT][hapmap];0.80[EUR][1000 genomes]
rs2979264	0.80[EUR][1000 genomes]
rs2979265	0.93[JPT][hapmap]
rs2979266	0.93[JPT][hapmap];0.82[EUR][1000 genomes]
rs35076339	0.91[EUR][1000 genomes]
rs4081881	0.93[JPT][hapmap];0.85[EUR][1000 genomes]
rs4433148	0.88[EUR][1000 genomes]
rs4551361	0.88[EUR][1000 genomes]
rs4601317	0.88[EUR][1000 genomes]
rs4636210	0.88[EUR][1000 genomes]
rs4840383	0.83[ASN][1000 genomes]
rs4841083	0.93[JPT][hapmap]
rs55654856	0.90[EUR][1000 genomes]
rs57552272	0.90[EUR][1000 genomes]
rs58254294	0.90[EUR][1000 genomes]
rs58604216	0.90[EUR][1000 genomes]
rs60664964	0.90[EUR][1000 genomes]
rs62492945	0.80[ASN][1000 genomes]
rs6422353	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs67831654	0.91[EUR][1000 genomes]
rs68132987	0.90[EUR][1000 genomes]
rs68159296	0.85[EUR][1000 genomes]
rs6983008	0.90[EUR][1000 genomes]
rs6983030	0.90[EUR][1000 genomes]
rs6983503	0.90[EUR][1000 genomes]
rs6983504	0.90[EUR][1000 genomes]
rs6987223	0.90[EUR][1000 genomes]
rs6987558	0.92[JPT][hapmap]
rs6990532	0.88[EUR][1000 genomes]
rs6992896	0.90[EUR][1000 genomes]
rs7001457	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7001518	0.86[EUR][1000 genomes]
rs7006526	0.90[EUR][1000 genomes]
rs7006798	0.88[EUR][1000 genomes]
rs7007290	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7012685	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7012954	0.88[EUR][1000 genomes]
rs7012984	0.90[EUR][1000 genomes]
rs73195758	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73195765	0.81[EUR][1000 genomes]
rs73195769	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73195777	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73195780	0.90[EUR][1000 genomes]
rs73518370	0.90[EUR][1000 genomes]
rs7357601	0.85[EUR][1000 genomes]
rs7839585	0.92[JPT][hapmap]
rs9644673	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9644696	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs987537	1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs987538	0.93[JPT][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890331	chr8:8093240-8971100	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv995047	chr8:8353662-8857913	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv917117	chr8:8621658-9313799	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv831229	chr8:8751523-8926235	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv1026913	chr8:8773659-8838256	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv610205	chr8:8799111-8891644	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:8811000-8836000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr8:8820800-8835400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr8:8821200-8835600	Weak transcription	Gastric	stomach
4	chr8:8830200-8832200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr8:8830200-8835000	Weak transcription	Liver	Liver
6	chr8:8830400-8832200	Enhancers	K562	blood
7	chr8:8830600-8832200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr8:8831000-8832200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:8831400-8832200	Enhancers	HepG2	liver
10	chr8:8831400-8835400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr8:8831800-8832600	Enhancers	Dnd41	blood

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