Variant report

Variant	rs12677487
Chromosome Location	chr8:117710779-117710780
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:117709011..117712281-chr8:117714781..117718785,3	MCF-7	breast:
2	chr8:117709911..117712447-chr8:117715749..117718560,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10464860	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10955786	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11988527	0.92[ASN][1000 genomes]
rs12056869	0.92[AMR][1000 genomes]
rs17743459	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17743495	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17743585	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17743793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17805619	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2278491	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4565487	0.87[ASN][1000 genomes]
rs4610785	0.89[AMR][1000 genomes]
rs67991519	0.89[ASN][1000 genomes]
rs7003034	0.93[ASN][1000 genomes]
rs73322464	0.88[ASN][1000 genomes]
rs73701316	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73701461	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73701465	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:117654600-117715200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:117671000-117717600	Weak transcription	HepG2	liver
3	chr8:117698000-117711200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:117698400-117713400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:117699000-117719000	Weak transcription	Fetal Muscle Leg	muscle
6	chr8:117700200-117715200	Weak transcription	Fetal Intestine Small	intestine
7	chr8:117701400-117716200	Weak transcription	Fetal Heart	heart
8	chr8:117703400-117721200	Weak transcription	HSMM	muscle
9	chr8:117703600-117715400	Weak transcription	Fetal Stomach	stomach
10	chr8:117703800-117721000	Weak transcription	NH-A	brain
11	chr8:117704000-117720000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr8:117704600-117715400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr8:117704600-117722000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr8:117704800-117714400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr8:117706000-117720800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr8:117706200-117711000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr8:117706600-117719200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr8:117707200-117718200	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr8:117707200-117726800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr8:117707400-117711200	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr8:117707600-117721400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr8:117707800-117713400	Weak transcription	A549	lung
23	chr8:117707800-117715000	Weak transcription	Primary T cells from cord blood	blood
24	chr8:117707800-117717600	Weak transcription	Stomach Mucosa	stomach
25	chr8:117707800-117721400	Weak transcription	NHDF-Ad	bronchial
26	chr8:117707800-117732600	Weak transcription	Fetal Thymus	thymus
27	chr8:117708000-117710800	Weak transcription	GM12878-XiMat	blood
28	chr8:117708000-117715000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr8:117708000-117715200	Weak transcription	Ovary	ovary
30	chr8:117708000-117715400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr8:117708000-117715600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr8:117708000-117715600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr8:117708000-117715600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr8:117708000-117715600	Weak transcription	Left Ventricle	heart
35	chr8:117708000-117715600	Weak transcription	Lung	lung
36	chr8:117708000-117715600	Weak transcription	Pancreas	Pancrea
37	chr8:117708000-117717000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr8:117708000-117717600	Weak transcription	Right Ventricle	heart
39	chr8:117708000-117717800	Weak transcription	Psoas Muscle	Psoas
40	chr8:117708000-117718800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr8:117708000-117718800	Weak transcription	Aorta	Aorta
42	chr8:117708000-117720200	Weak transcription	Thymus	Thymus
43	chr8:117708000-117721000	Weak transcription	HMEC	breast
44	chr8:117708000-117721400	Weak transcription	Dnd41	blood
45	chr8:117708000-117721600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr8:117708000-117733200	Weak transcription	Hela-S3	cervix
47	chr8:117708200-117715200	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr8:117708200-117715600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr8:117708200-117721200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr8:117708400-117715200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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