Variant report

Variant	rs73701461
Chromosome Location	chr8:117736068-117736069
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:117735115..117737954-chr8:117739728..117741269,2	MCF-7	breast:
2	chr8:117726657..117728747-chr8:117735773..117737696,2	MCF-7	breast:
3	chr8:117735311..117740045-chr8:117740226..117743682,7	K562	blood:
4	chr8:117730565..117733333-chr8:117735015..117736708,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10464860	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10955786	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11988527	0.81[ASN][1000 genomes]
rs12056869	0.81[AMR][1000 genomes]
rs12677487	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17743459	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17743495	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17743585	0.86[ASN][1000 genomes]
rs17743793	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17805619	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2278491	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6988452	0.86[AMR][1000 genomes]
rs7003034	0.83[ASN][1000 genomes]
rs73701316	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73701465	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:117722000-117740800	Weak transcription	NHLF	lung
2	chr8:117722400-117738800	Weak transcription	Small Intestine	intestine
3	chr8:117722600-117740800	Weak transcription	HSMMtube	muscle
4	chr8:117724600-117738800	Weak transcription	Psoas Muscle	Psoas
5	chr8:117728000-117740800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr8:117728000-117740800	Weak transcription	Osteobl	bone
7	chr8:117728600-117740400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr8:117728800-117739400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr8:117730800-117736800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr8:117731200-117736600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
11	chr8:117731200-117739400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr8:117731400-117737600	Weak transcription	Fetal Brain Male	brain
13	chr8:117731400-117739400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr8:117731400-117740200	ZNF genes & repeats	GM12878-XiMat	blood
15	chr8:117732000-117736400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
16	chr8:117732600-117736200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
17	chr8:117732600-117736600	ZNF genes & repeats	Dnd41	blood
18	chr8:117732600-117738200	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr8:117732800-117738400	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr8:117733000-117736400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr8:117733000-117739800	Weak transcription	Fetal Heart	heart
22	chr8:117733000-117740800	Weak transcription	NHDF-Ad	bronchial
23	chr8:117733000-117742400	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr8:117733600-117737000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr8:117733600-117737000	Strong transcription	Hela-S3	cervix
26	chr8:117733600-117737400	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr8:117733600-117738400	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr8:117733600-117740800	Weak transcription	Aorta	Aorta
29	chr8:117733600-117740800	Weak transcription	Rectal Smooth Muscle	rectum
30	chr8:117733600-117741000	Weak transcription	HUVEC	blood vessel
31	chr8:117733600-117742400	Weak transcription	Right Ventricle	heart
32	chr8:117733600-117745000	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr8:117733600-117745200	Weak transcription	Brain Anterior Caudate	brain
34	chr8:117733600-117766600	Weak transcription	Fetal Lung	lung
35	chr8:117733600-117766800	Weak transcription	Adipose Nuclei	Adipose
36	chr8:117734000-117736600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr8:117734000-117737200	Weak transcription	Liver	Liver
38	chr8:117734000-117737600	Strong transcription	Duodenum Mucosa	Duodenum
39	chr8:117734000-117737800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr8:117734000-117739800	Weak transcription	Colonic Mucosa	Colon
41	chr8:117734000-117740600	Weak transcription	HMEC	breast
42	chr8:117734000-117742200	Weak transcription	NH-A	brain
43	chr8:117734000-117742400	Weak transcription	Esophagus	oesophagus
44	chr8:117734000-117747800	Weak transcription	Lung	lung
45	chr8:117734200-117736400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr8:117734200-117737400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr8:117734200-117752400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr8:117734400-117736200	Weak transcription	Placenta	Placenta
49	chr8:117734400-117737400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr8:117734400-117737400	Weak transcription	Muscle Satellite Cultured Cells	--

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