Variant report

Variant	rs12677572
Chromosome Location	chr8:117619136-117619137
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:117618321..117620667-chr8:117622056..117624055,2	K562	blood:
2	chr8:117613614..117616350-chr8:117617973..117619812,3	K562	blood:
3	chr8:117614677..117616276-chr8:117617973..117619576,3	K562	blood:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-UTP23-1	chr8:117619033-117619161	XLOC_006905
2	lnc-UTP23-1	chr8:117619033-117619161	XLOC_006905
3	lnc-UTP23-1	chr8:117619032-117619161	NONHSAT128376
4	lnc-UTP23-1	chr8:117619033-117619161	NONHSAT128375

No data

No data

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12674800	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12675468	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12677069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12678178	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12679048	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12682068	0.88[EUR][1000 genomes]
rs1529944	0.81[EUR][1000 genomes]
rs1968495	0.81[EUR][1000 genomes]
rs2278491	1.00[YRI][hapmap]
rs7003608	0.81[EUR][1000 genomes]
rs7003645	0.81[EUR][1000 genomes]
rs7814028	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7844527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:117618800-117619600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr8:117619000-117619600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links