Variant report
| Variant | rs7814028 |
|---|---|
| Chromosome Location | chr8:117616931-117616932 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:4)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:117613564..117617067-chr8:117626508..117629735,3 | K562 | blood: | |
| 2 | chr8:117614753..117617067-chr8:117626877..117629735,2 | K562 | blood: | |
| 3 | chr8:117609409..117613143-chr8:117613461..117617980,5 | K562 | blood: | |
| 4 | chr8:117570295..117572953-chr8:117614657..117617379,2 | K562 | blood: | |
| 5 | chr20:55777938..55780435-chr8:117616040..117617880,2 | MCF-7 | breast: |
(count:4 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-UTP23-1 | chr8:117616759-117617001 | XLOC_006905 |
| 2 | lnc-UTP23-1 | chr8:117616759-117617001 | XLOC_006905 |
| 3 | lnc-UTP23-1 | chr8:117616758-117617001 | NONHSAT128376 |
| 4 | lnc-UTP23-1 | chr8:117616710-117616957 | NONHSAT128375 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs12674800 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12675468 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12677069 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12677572 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12678178 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12679048 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12682068 | 0.88[EUR][1000 genomes] |
| rs1529944 | 0.81[EUR][1000 genomes] |
| rs1968495 | 0.81[EUR][1000 genomes] |
| rs7003608 | 0.81[EUR][1000 genomes] |
| rs7003645 | 0.81[EUR][1000 genomes] |
| rs7844527 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530386 | chr8:117509968-118391406 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
