Variant report

Variant	rs12678907
Chromosome Location	chr8:120599894-120599895
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12676315	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17194431	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1992721	0.86[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2249015	0.94[YRI][hapmap];0.86[AFR][1000 genomes]
rs2289885	0.91[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs2326304	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2326305	0.94[ASN][1000 genomes]
rs2326306	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2875906	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3793378	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6469833	1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs7012253	0.85[AFR][1000 genomes]
rs7012371	0.85[AFR][1000 genomes]
rs9297600	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868916	chr8:119911943-120762250	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv534028	chr8:120348940-120906079	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv949368	chr8:120568034-121019872	Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv1021071	chr8:120589963-120968317	Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120566000-120609200	Weak transcription	Aorta	Aorta
2	chr8:120569600-120613600	Weak transcription	Small Intestine	intestine
3	chr8:120572200-120614200	Weak transcription	Fetal Intestine Large	intestine
4	chr8:120573000-120607200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr8:120589600-120603000	Genic enhancers	NHDF-Ad	bronchial
6	chr8:120591000-120605400	Weak transcription	Fetal Brain Male	brain
7	chr8:120591600-120600000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr8:120593000-120604800	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr8:120593800-120600000	Strong transcription	Liver	Liver
10	chr8:120595600-120601200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr8:120595600-120601400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr8:120595600-120638000	Weak transcription	Fetal Muscle Leg	muscle
13	chr8:120595800-120633000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr8:120595800-120637800	Weak transcription	Fetal Stomach	stomach
15	chr8:120596200-120606800	Weak transcription	Primary T cells from cord blood	blood
16	chr8:120596800-120600200	Enhancers	NHLF	lung
17	chr8:120597600-120600200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr8:120597600-120600200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr8:120597600-120634400	Weak transcription	Fetal Thymus	thymus
20	chr8:120598000-120600000	Genic enhancers	Fetal Lung	lung
21	chr8:120598000-120600200	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr8:120598000-120600200	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr8:120598200-120600000	Enhancers	Brain Cingulate Gyrus	brain
24	chr8:120598400-120600000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr8:120598400-120601800	Genic enhancers	Adipose Nuclei	Adipose
26	chr8:120598800-120601200	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr8:120599000-120600000	Enhancers	Placenta	Placenta
28	chr8:120599000-120600600	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr8:120599000-120601600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr8:120599000-120602000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr8:120599200-120601000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr8:120599200-120608000	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr8:120599200-120612800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr8:120599400-120600000	Enhancers	Muscle Satellite Cultured Cells	--
35	chr8:120599400-120600000	Enhancers	Brain Anterior Caudate	brain
36	chr8:120599400-120600200	Enhancers	Osteobl	bone
37	chr8:120599400-120600600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr8:120599400-120600800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr8:120599400-120603200	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr8:120599400-120609000	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr8:120599600-120600000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr8:120599600-120600800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr8:120599600-120600800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr8:120599600-120601000	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr8:120599600-120601000	Weak transcription	Brain Substantia Nigra	brain
46	chr8:120599600-120601400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr8:120599800-120601000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr8:120599800-120601400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr8:120599800-120601400	Weak transcription	HSMM	muscle
50	chr8:120599800-120602000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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