Variant report

Variant	rs12679642
Chromosome Location	chr8:105426368-105426369
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16871538	0.91[JPT][hapmap];0.86[EUR][1000 genomes]
rs2003414	1.00[AFR][1000 genomes]
rs2246827	0.84[AMR][1000 genomes]
rs2853150	0.80[AMR][1000 genomes]
rs2853151	0.80[AMR][1000 genomes]
rs2853156	0.84[AMR][1000 genomes]
rs2853157	0.82[AMR][1000 genomes]
rs2853164	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105424400-105429200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr8:105424400-105430200	Weak transcription	Fetal Thymus	thymus
3	chr8:105424600-105428400	Weak transcription	Brain Anterior Caudate	brain
4	chr8:105424600-105428800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr8:105424600-105429000	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr8:105424600-105429200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr8:105424600-105430400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr8:105424800-105428600	Weak transcription	Fetal Brain Male	brain
9	chr8:105424800-105430000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr8:105424800-105430200	Weak transcription	Right Atrium	heart
11	chr8:105425000-105427000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr8:105425000-105429000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr8:105425000-105429000	Weak transcription	Brain Hippocampus Middle	brain
14	chr8:105425200-105428400	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr8:105425200-105428600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr8:105425200-105428600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr8:105425200-105428800	Weak transcription	Fetal Lung	lung
18	chr8:105425200-105429200	Weak transcription	Adipose Nuclei	Adipose
19	chr8:105425200-105430200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr8:105425400-105428600	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr8:105426200-105428600	Strong transcription	Liver	Liver

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