Variant report

Variant	rs2853157
Chromosome Location	chr8:105409754-105409755
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12679642	0.82[AMR][1000 genomes]
rs2246821	1.00[CEU][hapmap]
rs2246827	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[AMR][1000 genomes]
rs2253336	0.94[CHB][hapmap]
rs2669419	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[AMR][1000 genomes]
rs2669432	1.00[CEU][hapmap];0.88[CHB][hapmap];0.87[AMR][1000 genomes]
rs2853150	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap];0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2853151	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap];0.94[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2853156	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.98[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2853164	1.00[CEU][hapmap];0.89[CHB][hapmap];0.90[AMR][1000 genomes]
rs2853169	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[AMR][1000 genomes]
rs2853170	1.00[CEU][hapmap];0.88[CHB][hapmap];0.89[AMR][1000 genomes]
rs3793356	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.91[AMR][1000 genomes]
rs4236774	0.89[AMR][1000 genomes]
rs4734106	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1032775	chr8:105311364-105409972	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105390400-105421000	Strong transcription	Liver	Liver
2	chr8:105399400-105418400	Weak transcription	Fetal Kidney	kidney
3	chr8:105402400-105410400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:105408400-105412400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr8:105409200-105411000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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