Variant report

Variant	rs12684783
Chromosome Location	chr9:136833839-136833840
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:136823911..136827460-chr9:136829913..136836528,5	MCF-7	breast:
2	chr9:136776206..136778622-chr9:136832322..136834607,2	MCF-7	breast:
3	chr9:136830027..136831727-chr9:136833822..136836269,2	MCF-7	breast:
4	chr9:136814134..136815760-chr9:136832244..136834207,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs56270445	0.81[ASN][1000 genomes]
rs68183977	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72619336	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894123	chr9:136682408-136852501	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv894124	chr9:136716399-136870787	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv894125	chr9:136723520-136931957	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv894128	chr9:136753246-136906752	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv1046310	chr9:136762829-136872226	Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv894130	chr9:136767346-136906752	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	nsv831748	chr9:136788484-136944326	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
8	nsv894131	chr9:136792765-136906752	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	nsv466626	chr9:136807770-136835343	Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv615742	chr9:136807770-136835343	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv831749	chr9:136809200-136915764	Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
12	nsv894132	chr9:136813341-136950691	Active TSS Genic enhancers Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
13	nsv982642	chr9:136819005-136837069	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv428226	chr9:136825035-136994606	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:136822600-136837000	Weak transcription	Colon Smooth Muscle	Colon
2	chr9:136822800-136836600	Weak transcription	NHDF-Ad	bronchial
3	chr9:136824400-136836800	Weak transcription	NH-A	brain
4	chr9:136824800-136835800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr9:136825600-136834400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:136825600-136836800	Weak transcription	NHLF	lung
7	chr9:136826000-136839200	Weak transcription	Left Ventricle	heart
8	chr9:136826200-136834400	Weak transcription	HSMM	muscle
9	chr9:136826200-136835800	Weak transcription	Ovary	ovary
10	chr9:136826200-136835800	Weak transcription	Right Atrium	heart
11	chr9:136826800-136835600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr9:136827200-136834200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr9:136827400-136834200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr9:136827400-136835800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr9:136828000-136836600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr9:136828600-136834600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr9:136828800-136835000	Weak transcription	Gastric	stomach
18	chr9:136828800-136835800	Weak transcription	HepG2	liver
19	chr9:136831800-136836200	Weak transcription	Liver	Liver
20	chr9:136832000-136840800	Enhancers	Primary B cells from cord blood	blood
21	chr9:136832200-136834400	Weak transcription	Lung	lung
22	chr9:136832400-136842400	Enhancers	Primary B cells from peripheral blood	blood
23	chr9:136832600-136834400	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr9:136832600-136843800	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr9:136832800-136844200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr9:136833000-136836200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr9:136833200-136834800	Enhancers	Fetal Lung	lung
28	chr9:136833200-136839800	Enhancers	Fetal Brain Female	brain
29	chr9:136833400-136834200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr9:136833400-136837800	Enhancers	NHEK	skin
31	chr9:136833600-136834000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
32	chr9:136833600-136834200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr9:136833600-136835000	Enhancers	Right Ventricle	heart
34	chr9:136833600-136835400	Strong transcription	Fetal Intestine Small	intestine
35	chr9:136833600-136837400	Enhancers	Fetal Stomach	stomach
36	chr9:136833600-136839600	Enhancers	Fetal Brain Male	brain
37	chr9:136833600-136839800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr9:136833600-136839800	Enhancers	Fetal Muscle Leg	muscle
39	chr9:136833600-136842000	Enhancers	Pancreas	Pancrea
40	chr9:136833800-136834000	Flanking Active TSS	GM12878-XiMat	blood
41	chr9:136833800-136835000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr9:136833800-136835600	Enhancers	HMEC	breast
43	chr9:136833800-136837600	Enhancers	Placenta	Placenta
44	chr9:136833800-136839600	Enhancers	Brain Germinal Matrix	brain
45	chr9:136833800-136840200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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