Variant report

Variant	rs56270445
Chromosome Location	chr9:136827410-136827411
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:136824341..136826018-chr9:136827360..136829019,2	MCF-7	breast:
2	chr9:136822394..136827953-chr9:136855901..136860268,9	MCF-7	breast:
3	chr9:136818593..136821583-chr9:136825689..136827854,2	MCF-7	breast:
4	chr9:136738427..136740068-chr9:136827003..136828937,2	MCF-7	breast:
5	chr9:136823911..136827460-chr9:136829913..136836528,5	MCF-7	breast:
6	chr9:136821303..136824220-chr9:136826571..136828241,2	MCF-7	breast:
7	chr9:136737400..136743457-chr9:136819359..136829756,12	MCF-7	breast:
8	chr9:136825997..136828565-chr9:136829281..136832020,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000160293	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12684783	0.81[ASN][1000 genomes]
rs68183977	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894123	chr9:136682408-136852501	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv894124	chr9:136716399-136870787	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv894125	chr9:136723520-136931957	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv894128	chr9:136753246-136906752	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv1046310	chr9:136762829-136872226	Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv894130	chr9:136767346-136906752	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	nsv831748	chr9:136788484-136944326	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
8	nsv894131	chr9:136792765-136906752	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	nsv466626	chr9:136807770-136835343	Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv615742	chr9:136807770-136835343	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv831749	chr9:136809200-136915764	Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
12	nsv894132	chr9:136813341-136950691	Active TSS Genic enhancers Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
13	nsv982642	chr9:136819005-136837069	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv428226	chr9:136825035-136994606	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:136821800-136828600	Enhancers	Primary B cells from cord blood	blood
2	chr9:136822400-136828800	Enhancers	Primary B cells from peripheral blood	blood
3	chr9:136822600-136837000	Weak transcription	Colon Smooth Muscle	Colon
4	chr9:136822800-136828200	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr9:136822800-136836600	Weak transcription	NHDF-Ad	bronchial
6	chr9:136823000-136827600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr9:136823000-136829000	Weak transcription	Fetal Brain Female	brain
8	chr9:136823600-136827600	Enhancers	Lung	lung
9	chr9:136823600-136828800	Enhancers	Fetal Muscle Leg	muscle
10	chr9:136823600-136828800	Enhancers	Pancreas	Pancrea
11	chr9:136823800-136827600	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr9:136823800-136827600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
13	chr9:136823800-136828400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr9:136823800-136829000	Enhancers	Stomach Mucosa	stomach
15	chr9:136824000-136827600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr9:136824200-136828800	Enhancers	Liver	Liver
17	chr9:136824400-136836800	Weak transcription	NH-A	brain
18	chr9:136824600-136827800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr9:136824800-136827600	Enhancers	Spleen	Spleen
20	chr9:136824800-136832200	Weak transcription	HSMMtube	muscle
21	chr9:136824800-136835800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr9:136825000-136827600	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
23	chr9:136825600-136828200	Enhancers	Fetal Lung	lung
24	chr9:136825600-136834400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr9:136825600-136836800	Weak transcription	NHLF	lung
26	chr9:136825800-136831000	Weak transcription	Hela-S3	cervix
27	chr9:136826000-136827600	Flanking Active TSS	GM12878-XiMat	blood
28	chr9:136826000-136833600	Weak transcription	Fetal Stomach	stomach
29	chr9:136826000-136839200	Weak transcription	Left Ventricle	heart
30	chr9:136826200-136834400	Weak transcription	HSMM	muscle
31	chr9:136826200-136835800	Weak transcription	Ovary	ovary
32	chr9:136826200-136835800	Weak transcription	Right Atrium	heart
33	chr9:136826400-136827600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr9:136826600-136828000	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr9:136826800-136827800	Strong transcription	Fetal Intestine Small	intestine
36	chr9:136826800-136828200	Weak transcription	HepG2	liver
37	chr9:136826800-136835600	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr9:136827000-136828600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr9:136827000-136828800	Enhancers	Fetal Muscle Trunk	muscle
40	chr9:136827000-136833600	Weak transcription	Right Ventricle	heart
41	chr9:136827200-136828200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr9:136827200-136828600	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr9:136827200-136828800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr9:136827200-136834200	Weak transcription	Stomach Smooth Muscle	stomach
45	chr9:136827400-136827600	Enhancers	Brain Substantia Nigra	brain
46	chr9:136827400-136827600	Enhancers	Esophagus	oesophagus
47	chr9:136827400-136827800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr9:136827400-136828800	Enhancers	Gastric	stomach
49	chr9:136827400-136831400	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr9:136827400-136834200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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