Variant report

Variant	rs12685417
Chromosome Location	chr9:116213504-116213505
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10739393	0.92[JPT][hapmap]
rs12350531	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs12686023	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17187621	0.88[CHB][hapmap];0.89[CHD][hapmap];0.92[JPT][hapmap]
rs4979253	0.84[JPT][hapmap]
rs4979261	0.92[JPT][hapmap]
rs518636	0.88[CHB][hapmap];0.89[CHD][hapmap];0.92[JPT][hapmap]
rs58449392	0.84[ASN][1000 genomes]
rs7867430	0.83[ASN][1000 genomes]
rs818714	0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116199600-116216200	Weak transcription	Placenta	Placenta
2	chr9:116199600-116217200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:116208200-116216200	Weak transcription	HepG2	liver
4	chr9:116208200-116217000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr9:116209200-116216200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr9:116209200-116216200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr9:116209200-116216400	Weak transcription	Colon Smooth Muscle	Colon
8	chr9:116209200-116216600	Weak transcription	Right Atrium	heart
9	chr9:116209200-116216600	Weak transcription	HUVEC	blood vessel
10	chr9:116209200-116217000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr9:116210000-116215000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr9:116210000-116218400	Weak transcription	Aorta	Aorta
13	chr9:116211400-116216600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr9:116211600-116217000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr9:116211800-116217000	Weak transcription	Fetal Stomach	stomach
16	chr9:116211800-116219600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr9:116212000-116214400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr9:116212000-116216200	Weak transcription	Adipose Nuclei	Adipose
19	chr9:116212800-116215000	Enhancers	Fetal Heart	heart
20	chr9:116213000-116216600	Weak transcription	Stomach Smooth Muscle	stomach
21	chr9:116213200-116216200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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