Variant report

Variant	rs818714
Chromosome Location	chr9:116183301-116183302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10739393	0.82[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs12350531	0.85[JPT][hapmap]
rs12685417	0.92[JPT][hapmap]
rs12686023	0.92[JPT][hapmap]
rs17187621	0.85[JPT][hapmap]
rs4979253	1.00[CHB][hapmap];0.96[CHD][hapmap];0.92[JPT][hapmap]
rs4979261	0.82[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs518636	0.85[JPT][hapmap]
rs818717	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs818714	ALAD	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116174200-116187000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:116180400-116186600	Weak transcription	Primary B cells from cord blood	blood
3	chr9:116182400-116186000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:116182800-116184600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr9:116183200-116186400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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