Variant report

Variant	rs12686188
Chromosome Location	chr9:8666150-8666151
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1033125	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs1033126	0.85[EUR][1000 genomes]
rs1033127	0.83[EUR][1000 genomes]
rs1033128	0.83[EUR][1000 genomes]
rs11793328	0.81[EUR][1000 genomes]
rs11795341	0.81[EUR][1000 genomes]
rs12682756	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12683865	0.85[CEU][hapmap];0.86[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12686827	0.87[CEU][hapmap]
rs12686852	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs16924692	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs16928219	1.00[CEU][hapmap]
rs16928232	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs16928234	0.85[EUR][1000 genomes]
rs35286414	0.86[EUR][1000 genomes]
rs3750490	1.00[CEU][hapmap]
rs60836031	0.86[EUR][1000 genomes]
rs72698292	0.85[EUR][1000 genomes]
rs72698293	0.85[EUR][1000 genomes]
rs72698295	0.83[EUR][1000 genomes]
rs72700308	0.83[EUR][1000 genomes]
rs72700311	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv892228	chr9:8482778-8703733	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv892232	chr9:8645448-8698875	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv892233	chr9:8645448-8702964	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv892234	chr9:8645448-8703733	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8652800-8669000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:8660600-8668000	Weak transcription	Fetal Brain Female	brain
3	chr9:8660800-8672400	Weak transcription	Brain Germinal Matrix	brain
4	chr9:8661400-8666200	Weak transcription	Liver	Liver
5	chr9:8661400-8668800	Weak transcription	Fetal Brain Male	brain
6	chr9:8661400-8677400	Weak transcription	Brain Angular Gyrus	brain
7	chr9:8664600-8668800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr9:8664800-8666200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr9:8665000-8668800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr9:8665200-8666800	Enhancers	Fetal Lung	lung
11	chr9:8665200-8668400	Weak transcription	Brain Hippocampus Middle	brain
12	chr9:8665400-8667000	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr9:8666000-8666400	Weak transcription	Brain Anterior Caudate	brain
14	chr9:8666000-8666600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr9:8666000-8668200	Weak transcription	Brain Substantia Nigra	brain

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