Variant report

Variant	rs72698295
Chromosome Location	chr9:8644911-8644912
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1033125	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1033126	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1033127	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1033128	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11793328	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11795341	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12682677	0.87[AFR][1000 genomes]
rs12682756	0.89[EUR][1000 genomes]
rs12683602	0.81[EUR][1000 genomes]
rs12686075	0.87[AFR][1000 genomes]
rs12686188	0.83[EUR][1000 genomes]
rs12686394	0.83[EUR][1000 genomes]
rs12686827	0.81[EUR][1000 genomes]
rs12686852	0.91[EUR][1000 genomes]
rs16928219	0.83[EUR][1000 genomes]
rs16928232	0.93[EUR][1000 genomes]
rs16928234	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35286414	0.93[EUR][1000 genomes]
rs3750490	0.85[EUR][1000 genomes]
rs56150041	0.83[AFR][1000 genomes]
rs56236902	0.84[AFR][1000 genomes]
rs56272971	0.84[AFR][1000 genomes]
rs60519226	0.85[EUR][1000 genomes]
rs60836031	0.93[EUR][1000 genomes]
rs72698264	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72698266	0.84[AFR][1000 genomes]
rs72698268	0.84[AFR][1000 genomes]
rs72698270	0.84[AFR][1000 genomes]
rs72698271	0.84[AFR][1000 genomes]
rs72698274	0.84[AFR][1000 genomes]
rs72698277	0.84[AFR][1000 genomes]
rs72698280	0.84[AFR][1000 genomes]
rs72698282	0.84[AFR][1000 genomes]
rs72698283	0.80[AFR][1000 genomes]
rs72698287	0.86[AFR][1000 genomes]
rs72698292	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72698293	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72700308	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72700311	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv892228	chr9:8482778-8703733	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv831504	chr9:8496277-8665773	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv892231	chr9:8569186-8659757	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8616800-8648000	Weak transcription	Fetal Kidney	kidney
2	chr9:8622000-8648600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr9:8623400-8647800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr9:8629800-8651600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr9:8630200-8652400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr9:8631000-8649800	Weak transcription	Ovary	ovary
7	chr9:8634600-8648000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr9:8638000-8648000	Weak transcription	Fetal Brain Male	brain
9	chr9:8642600-8647800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr9:8643400-8645000	Enhancers	Fetal Muscle Trunk	muscle
11	chr9:8643600-8645000	Enhancers	Brain Substantia Nigra	brain
12	chr9:8643800-8647800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr9:8644000-8645200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr9:8644000-8651800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr9:8644200-8645000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
16	chr9:8644400-8645000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr9:8644400-8647800	Weak transcription	Brain Hippocampus Middle	brain
18	chr9:8644400-8660400	Weak transcription	Aorta	Aorta
19	chr9:8644600-8651200	Weak transcription	Fetal Muscle Leg	muscle
20	chr9:8644800-8647800	Weak transcription	Brain Inferior Temporal Lobe	brain

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