Variant report

Variant	rs12688056
Chromosome Location	chrX:74024626-74024627
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12689586	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs16991813	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs16991826	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs2366467	1.00[CEU][hapmap]
rs5937297	1.00[CEU][hapmap]
rs5937314	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs5937904	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs5981697	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916758	chrX:73546406-74420929	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv532878	chrX:73603325-74057587	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:74024400-74025000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
2	chrX:74024400-74025400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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