Variant report

Variant	rs12689084
Chromosome Location	chrX:78430897-78430898
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:56706259..56709497-chrX:78429768..78431270,3	MCF-7	breast:
2	chr17:56706703..56709057-chrX:78429769..78431270,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000212195	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12396488	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5912740	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394349	chrX:77977388-78779139	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
2	nsv932683	chrX:78373033-79166725	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869186	chrX:78392001-79166725	Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:78423000-78433200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chrX:78423000-78439600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chrX:78427600-78432000	Weak transcription	Primary hematopoietic stem cells	blood
4	chrX:78427600-78433600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chrX:78427800-78434600	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chrX:78428200-78431000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chrX:78428200-78431600	Genic enhancers	Dnd41	blood
8	chrX:78428400-78434000	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chrX:78428800-78450200	Weak transcription	Fetal Thymus	thymus
10	chrX:78429400-78434000	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chrX:78430000-78431000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chrX:78430000-78432400	Enhancers	Primary B cells from peripheral blood	blood
13	chrX:78430200-78431000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chrX:78430200-78431200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chrX:78430200-78432000	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chrX:78430400-78432200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chrX:78430400-78432400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chrX:78430600-78433800	Enhancers	Primary T cells from cord blood	blood
19	chrX:78430800-78431800	Enhancers	Primary T cells fromperipheralblood	blood
20	chrX:78430800-78432000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chrX:78430800-78432800	Enhancers	Primary B cells from cord blood	blood

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