Variant report

Variant	rs5912740
Chromosome Location	chrX:78339963-78339964
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12396488	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12689084	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12689898	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394349	chrX:77977388-78779139	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
2	nsv510837	chrX:78290996-78357205	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:78334400-78343800	Weak transcription	Primary T cells fromperipheralblood	blood
2	chrX:78336800-78340600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chrX:78337000-78341000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chrX:78337800-78340200	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chrX:78338000-78343800	Weak transcription	Primary B cells from peripheral blood	blood
6	chrX:78338000-78343800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chrX:78338600-78340600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chrX:78339000-78340400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chrX:78339000-78340400	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chrX:78339000-78343000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chrX:78339600-78341000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chrX:78339600-78341200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chrX:78339800-78340400	Weak transcription	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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