Variant report

Variant	rs12689898
Chromosome Location	chrX:78197309-78197310
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12396488	1.00[CHB][hapmap];0.93[CHD][hapmap]
rs17317336	0.86[CEU][hapmap];0.92[TSI][hapmap]
rs5912740	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394349	chrX:77977388-78779139	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:78196200-78197600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chrX:78196800-78197400	Enhancers	Primary T killer memory cells from peripheral blood	blood
3	chrX:78197200-78197400	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chrX:78197200-78197400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
5	chrX:78197200-78197400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
6	chrX:78197200-78197400	Enhancers	Monocytes-CD14+_RO01746	blood
7	chrX:78197200-78197600	Enhancers	Primary B cells from cord blood	blood
8	chrX:78197200-78197600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
9	chrX:78197200-78198000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chrX:78197200-78198400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chrX:78197200-78198600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chrX:78197200-78199400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chrX:78197200-78199600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chrX:78197200-78200000	Weak transcription	Primary hematopoietic stem cells	blood
15	chrX:78197200-78200400	Enhancers	Primary B cells from peripheral blood	blood
16	chrX:78197200-78200400	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chrX:78197200-78200400	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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