Variant report

Variant	rs12694232
Chromosome Location	chr2:212194222-212194223
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10175145	0.85[ASN][1000 genomes]
rs10199316	0.85[ASN][1000 genomes]
rs12694229	0.85[ASN][1000 genomes]
rs13430690	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1595063	0.82[JPT][hapmap]
rs1821657	0.91[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs4387721	0.85[ASN][1000 genomes]
rs4597455	0.85[ASN][1000 genomes]
rs4608461	0.85[ASN][1000 genomes]
rs4673607	0.85[ASN][1000 genomes]
rs7557116	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834522	chr2:212066442-212225328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv584313	chr2:212176967-212224689	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212193200-212195000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr2:212193600-212198200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr2:212194200-212194800	Enhancers	NHEK	skin
4	chr2:212194200-212195600	Enhancers	Hela-S3	cervix
5	chr2:212194200-212199000	Enhancers	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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