Variant report

Variant	rs1821657
Chromosome Location	chr2:212168303-212168304
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10175145	0.94[ASN][1000 genomes]
rs10199316	0.94[ASN][1000 genomes]
rs12694229	0.94[ASN][1000 genomes]
rs12694232	0.91[ASN][1000 genomes]
rs13430690	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1595063	0.81[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs4387721	0.94[ASN][1000 genomes]
rs4597455	0.94[ASN][1000 genomes]
rs4608461	0.94[ASN][1000 genomes]
rs4673607	0.94[ASN][1000 genomes]
rs7557116	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834522	chr2:212066442-212225328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212166800-212168600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr2:212166800-212168600	Enhancers	Brain Germinal Matrix	brain
3	chr2:212167000-212168600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr2:212167200-212168600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr2:212167200-212168600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr2:212168200-212168600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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