Variant report

Variant	rs12701653
Chromosome Location	chr7:38729405-38729406
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10085487	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs1012976	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10224856	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10225415	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10225550	1.00[CHB][hapmap]
rs10229055	1.00[CHB][hapmap]
rs10254354	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10270427	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10275873	1.00[CHB][hapmap]
rs10951574	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10951575	1.00[JPT][hapmap]
rs12701661	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs12701671	1.00[CHB][hapmap]
rs13224619	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs13230196	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13231372	1.00[CHB][hapmap]
rs13235997	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17680342	1.00[CEU][hapmap]
rs2040878	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2107742	1.00[JPT][hapmap]
rs2189854	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2190667	1.00[CHB][hapmap]
rs2190670	1.00[CHB][hapmap]
rs2214667	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2214668	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2215032	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2245773	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2286089	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2286093	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2286101	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2286103	1.00[JPT][hapmap]
rs2392599	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34705182	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs37472	1.00[JPT][hapmap]
rs37473	1.00[JPT][hapmap]
rs37476	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs37477	1.00[JPT][hapmap]
rs37478	1.00[JPT][hapmap]
rs37479	1.00[JPT][hapmap]
rs4720300	1.00[CHB][hapmap]
rs4720302	1.00[JPT][hapmap]
rs4723780	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4723781	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4723784	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4723786	1.00[JPT][hapmap]
rs4723787	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4723802	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6462866	1.00[JPT][hapmap]
rs6462871	1.00[CHB][hapmap]
rs6947695	1.00[CHB][hapmap]
rs6949958	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6951429	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6960945	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6967384	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6975410	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6979423	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs73365631	0.94[AFR][1000 genomes]
rs73365635	0.94[AFR][1000 genomes]
rs73365643	0.92[AFR][1000 genomes]
rs757685	1.00[JPT][hapmap]
rs758087	1.00[JPT][hapmap]
rs7787423	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7790054	1.00[CHB][hapmap]
rs7799887	1.00[CHB][hapmap]
rs976350	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887965	chr7:38706384-38793243	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12701653	VPS41	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38722200-38733800	Weak transcription	Right Atrium	heart

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