Variant report

Variant	rs10951575
Chromosome Location	chr7:38828640-38828641
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1012976	1.00[JPT][hapmap]
rs10224856	1.00[JPT][hapmap]
rs10225415	1.00[JPT][hapmap]
rs10239228	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10249968	1.00[AMR][1000 genomes]
rs10254354	1.00[JPT][hapmap]
rs10270427	1.00[JPT][hapmap]
rs10951574	1.00[JPT][hapmap]
rs12701653	1.00[JPT][hapmap]
rs12701661	1.00[JPT][hapmap]
rs13224619	1.00[JPT][hapmap]
rs13230196	1.00[JPT][hapmap]
rs13235997	1.00[JPT][hapmap]
rs2040878	1.00[JPT][hapmap]
rs2107742	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2189854	1.00[JPT][hapmap]
rs2214667	1.00[JPT][hapmap]
rs2214668	1.00[JPT][hapmap]
rs2215032	1.00[JPT][hapmap]
rs2245773	1.00[JPT][hapmap]
rs2286089	1.00[JPT][hapmap]
rs2286093	1.00[JPT][hapmap]
rs2286101	1.00[JPT][hapmap]
rs2286103	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2286108	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2392599	1.00[JPT][hapmap]
rs2392610	1.00[JPT][hapmap]
rs37472	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs37473	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs37475	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs37477	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs37478	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs37479	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4720302	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4723780	1.00[JPT][hapmap]
rs4723781	1.00[JPT][hapmap]
rs4723784	1.00[JPT][hapmap]
rs4723786	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4723787	1.00[JPT][hapmap]
rs4723802	1.00[JPT][hapmap]
rs6462866	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6949958	1.00[JPT][hapmap]
rs6951429	1.00[JPT][hapmap]
rs6960945	1.00[JPT][hapmap]
rs6963090	1.00[JPT][hapmap]
rs6967384	1.00[JPT][hapmap]
rs6975410	1.00[JPT][hapmap]
rs6976302	1.00[JPT][hapmap]
rs6976579	1.00[JPT][hapmap]
rs6979423	1.00[JPT][hapmap]
rs757685	1.00[JPT][hapmap]
rs758087	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7782140	1.00[JPT][hapmap]
rs7782277	1.00[JPT][hapmap]
rs7787423	1.00[JPT][hapmap]
rs7802510	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs976350	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs976351	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38757200-38835400	Weak transcription	Psoas Muscle	Psoas
2	chr7:38763400-38828800	Weak transcription	HepG2	liver
3	chr7:38780800-38828800	Weak transcription	Gastric	stomach
4	chr7:38784800-38835000	Weak transcription	NHEK	skin
5	chr7:38785600-38834600	Weak transcription	HMEC	breast
6	chr7:38785600-38835000	Weak transcription	NH-A	brain
7	chr7:38793400-38861200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr7:38793600-38832600	Weak transcription	Brain Angular Gyrus	brain
9	chr7:38798200-38828800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr7:38800200-38837600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr7:38803200-38845400	Weak transcription	Colonic Mucosa	Colon
12	chr7:38803200-38846000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr7:38804400-38836200	Weak transcription	Fetal Brain Male	brain
14	chr7:38806200-38828800	Weak transcription	Pancreas	Pancrea
15	chr7:38806600-38828800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr7:38806800-38828800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr7:38806800-38828800	Weak transcription	Brain Substantia Nigra	brain
18	chr7:38806800-38828800	Weak transcription	Esophagus	oesophagus
19	chr7:38806800-38828800	Weak transcription	Thymus	Thymus
20	chr7:38806800-38828800	Weak transcription	Spleen	Spleen
21	chr7:38806800-38832800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr7:38812600-38831400	Weak transcription	A549	lung
23	chr7:38812800-38834800	Weak transcription	HSMMtube	muscle
24	chr7:38813000-38828800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr7:38813600-38828800	Weak transcription	Fetal Muscle Trunk	muscle
26	chr7:38813800-38828800	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr7:38813800-38830600	Weak transcription	Rectal Smooth Muscle	rectum
28	chr7:38813800-38834200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr7:38813800-38836400	Weak transcription	HUVEC	blood vessel
30	chr7:38813800-38839600	Weak transcription	Right Ventricle	heart
31	chr7:38813800-38857400	Weak transcription	HSMM	muscle
32	chr7:38815000-38829000	Weak transcription	K562	blood
33	chr7:38816200-38828800	Weak transcription	Fetal Brain Female	brain
34	chr7:38816600-38828800	Weak transcription	Aorta	Aorta
35	chr7:38816600-38828800	Weak transcription	Fetal Thymus	thymus
36	chr7:38816600-38828800	Weak transcription	NHLF	lung
37	chr7:38818400-38833000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr7:38819400-38828800	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr7:38820000-38836600	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr7:38820600-38828800	Weak transcription	Lung	lung
41	chr7:38822000-38828800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr7:38822000-38828800	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr7:38822000-38828800	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr7:38822200-38828800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr7:38822200-38837400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr7:38822400-38836400	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr7:38822400-38855200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr7:38822800-38828800	Weak transcription	Fetal Intestine Small	intestine
49	chr7:38823000-38828800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr7:38823200-38828800	Weak transcription	Fetal Stomach	stomach

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