Variant report

Variant	rs12701867
Chromosome Location	chr7:41230669-41230670
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12701866	1.00[ASN][1000 genomes]
rs13225532	0.80[EUR][1000 genomes]
rs1557930	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs255014	0.86[EUR][1000 genomes]
rs255017	0.81[EUR][1000 genomes]
rs6951425	0.88[CEU][hapmap];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1028983	chr7:41165668-41635954	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv534465	chr7:41224437-41443498	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41225400-41231000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:41226000-41231000	Enhancers	HUVEC	blood vessel
3	chr7:41226400-41230800	Enhancers	HMEC	breast
4	chr7:41226400-41231000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr7:41226400-41231000	Enhancers	NHEK	skin
6	chr7:41226800-41230800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr7:41226800-41230800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr7:41226800-41231000	Enhancers	NHDF-Ad	bronchial
9	chr7:41227800-41231000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:41229000-41230800	Enhancers	HSMMtube	muscle
11	chr7:41229600-41231200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr7:41229600-41231400	Enhancers	HSMM	muscle
13	chr7:41229600-41232200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr7:41230200-41231000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr7:41230600-41234200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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