Variant report

Variant	rs6951425
Chromosome Location	chr7:41235609-41235610
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:57922773..57924988-chr7:41235428..41237179,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000201524	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10233411	0.81[ASN][1000 genomes]
rs10951647	0.90[ASN][1000 genomes]
rs11765463	0.81[EUR][1000 genomes]
rs11768019	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11768122	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12532282	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12668579	0.81[EUR][1000 genomes]
rs12701867	0.80[EUR][1000 genomes]
rs12701868	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12701869	0.81[ASN][1000 genomes]
rs12701870	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12701873	0.81[EUR][1000 genomes]
rs12701874	0.83[EUR][1000 genomes]
rs13225532	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13244372	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13311231	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1557928	0.81[EUR][1000 genomes]
rs2051869	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2051871	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs255008	0.86[ASN][1000 genomes]
rs255010	0.86[ASN][1000 genomes]
rs255012	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs255013	0.89[ASN][1000 genomes]
rs255014	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs255015	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs255016	0.89[ASN][1000 genomes]
rs255017	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs29530	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs29532	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs29533	0.86[ASN][1000 genomes]
rs29534	0.86[ASN][1000 genomes]
rs29536	0.86[ASN][1000 genomes]
rs29537	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs29538	0.86[ASN][1000 genomes]
rs29539	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34965184	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56215033	0.85[ASN][1000 genomes]
rs6955027	0.81[EUR][1000 genomes]
rs756439	0.86[ASN][1000 genomes]
rs7782143	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1028983	chr7:41165668-41635954	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv534465	chr7:41224437-41443498	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41234000-41237800	Weak transcription	Brain Substantia Nigra	brain
2	chr7:41235400-41236600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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