Variant report

Variant	rs7782143
Chromosome Location	chr7:41269884-41269885
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:41261382..41263717-chr7:41269869..41272043,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10233411	0.85[ASN][1000 genomes]
rs11762557	0.81[ASN][1000 genomes]
rs11765339	0.81[AMR][1000 genomes]
rs11765463	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11768019	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11768122	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12668579	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12701868	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12701869	0.85[ASN][1000 genomes]
rs12701870	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12701873	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12701874	0.84[EUR][1000 genomes]
rs13225532	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13244372	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13311231	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1557928	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1557930	0.84[EUR][1000 genomes]
rs2051869	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2051871	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs255012	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs255014	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs255015	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs255017	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs29530	0.81[EUR][1000 genomes]
rs29532	0.81[EUR][1000 genomes]
rs29537	0.82[EUR][1000 genomes]
rs29539	0.82[EUR][1000 genomes]
rs34965184	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56215033	0.97[ASN][1000 genomes]
rs6951425	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6955027	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6966153	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1028983	chr7:41165668-41635954	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv534465	chr7:41224437-41443498	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41259400-41278400	Weak transcription	HSMM	muscle
2	chr7:41264800-41271800	Weak transcription	Hela-S3	cervix
3	chr7:41265000-41296600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:41268000-41270800	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:41269600-41271600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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