Variant report

Variant	rs29530
Chromosome Location	chr7:41223305-41223306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10951647	0.82[ASN][1000 genomes]
rs11768019	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11768122	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12532282	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12701868	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12701870	0.82[EUR][1000 genomes]
rs13225532	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13311231	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs255008	0.89[ASN][1000 genomes]
rs255010	0.89[ASN][1000 genomes]
rs255012	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs255013	0.86[ASN][1000 genomes]
rs255014	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs255015	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs255016	0.86[ASN][1000 genomes]
rs255017	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28238	0.82[ASN][1000 genomes]
rs28314	0.81[ASN][1000 genomes]
rs29483	0.81[ASN][1000 genomes]
rs29485	0.81[ASN][1000 genomes]
rs29486	0.81[ASN][1000 genomes]
rs29488	0.81[ASN][1000 genomes]
rs29489	0.81[ASN][1000 genomes]
rs29490	0.81[ASN][1000 genomes]
rs29493	0.82[ASN][1000 genomes]
rs29495	0.82[ASN][1000 genomes]
rs29496	0.82[ASN][1000 genomes]
rs29497	0.82[ASN][1000 genomes]
rs29498	0.82[ASN][1000 genomes]
rs29499	0.81[ASN][1000 genomes]
rs29500	0.82[ASN][1000 genomes]
rs29501	0.82[ASN][1000 genomes]
rs29502	0.82[ASN][1000 genomes]
rs29504	0.82[ASN][1000 genomes]
rs29505	0.82[ASN][1000 genomes]
rs29506	0.82[ASN][1000 genomes]
rs29512	0.87[ASN][1000 genomes]
rs29513	0.87[ASN][1000 genomes]
rs29514	0.87[ASN][1000 genomes]
rs29515	0.87[ASN][1000 genomes]
rs29518	0.87[ASN][1000 genomes]
rs29521	0.87[ASN][1000 genomes]
rs29525	0.87[ASN][1000 genomes]
rs29526	0.87[ASN][1000 genomes]
rs29532	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs29533	0.89[ASN][1000 genomes]
rs29534	0.89[ASN][1000 genomes]
rs29536	0.89[ASN][1000 genomes]
rs29537	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs29538	0.89[ASN][1000 genomes]
rs29539	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6951425	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7384944	0.81[ASN][1000 genomes]
rs7782143	0.81[EUR][1000 genomes]
rs9632615	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1028983	chr7:41165668-41635954	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3419925	chr7:41221652-41224200	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
4	esv3404317	chr7:41222327-41223625	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41215200-41226600	Weak transcription	Aorta	Aorta
2	chr7:41215400-41230400	Weak transcription	Pancreas	Pancrea
3	chr7:41222200-41223600	Enhancers	HMEC	breast
4	chr7:41222400-41223400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr7:41222600-41226000	Weak transcription	HUVEC	blood vessel
6	chr7:41222600-41227600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:41222800-41223600	Enhancers	Ovary	ovary
8	chr7:41223000-41223800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:41223000-41223800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr7:41223000-41223800	Enhancers	NHEK	skin
11	chr7:41223200-41223400	Enhancers	Placenta	Placenta
12	chr7:41223200-41223600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr7:41223200-41223600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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