Variant report

Variant	rs29483
Chromosome Location	chr7:41189497-41189498
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:41183525..41185543-chr7:41189175..41191996,2	K562	blood:
2	chr7:41162891..41165369-chr7:41187985..41190735,2	MCF-7	breast:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10227446	0.80[EUR][1000 genomes]
rs10227663	0.80[EUR][1000 genomes]
rs10256962	0.86[EUR][1000 genomes]
rs10258940	0.86[EUR][1000 genomes]
rs10274211	0.86[EUR][1000 genomes]
rs12701866	0.85[EUR][1000 genomes]
rs1859693	0.86[EUR][1000 genomes]
rs2108156	0.86[EUR][1000 genomes]
rs2108157	0.86[EUR][1000 genomes]
rs28176	0.85[ASN][1000 genomes]
rs28238	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28314	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28880	0.86[EUR][1000 genomes]
rs29476	0.86[EUR][1000 genomes]
rs29477	0.86[EUR][1000 genomes]
rs29478	0.85[EUR][1000 genomes]
rs29482	0.86[EUR][1000 genomes]
rs29484	0.89[ASN][1000 genomes]
rs29485	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs29486	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs29488	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs29489	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs29490	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs29492	0.91[ASN][1000 genomes]
rs29493	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs29494	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs29495	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs29496	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs29497	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs29498	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs29499	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs29500	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs29501	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs29502	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs29504	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs29505	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs29506	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs29508	0.90[ASN][1000 genomes]
rs29509	0.90[ASN][1000 genomes]
rs29511	0.90[ASN][1000 genomes]
rs29512	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs29513	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs29514	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs29515	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs29518	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs29519	0.85[ASN][1000 genomes]
rs29521	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs29522	0.85[ASN][1000 genomes]
rs29523	0.83[ASN][1000 genomes]
rs29524	0.84[ASN][1000 genomes]
rs29525	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs29526	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs29530	0.81[ASN][1000 genomes]
rs29532	0.81[ASN][1000 genomes]
rs4720399	0.86[EUR][1000 genomes]
rs4724029	0.80[EUR][1000 genomes]
rs6463005	0.80[EUR][1000 genomes]
rs6463006	0.80[EUR][1000 genomes]
rs6463007	0.80[EUR][1000 genomes]
rs6463008	0.86[EUR][1000 genomes]
rs6945901	0.85[EUR][1000 genomes]
rs6946898	0.84[EUR][1000 genomes]
rs6951425	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6958423	0.85[EUR][1000 genomes]
rs7384944	0.95[ASN][1000 genomes]
rs7790556	0.85[EUR][1000 genomes]
rs7805795	0.85[EUR][1000 genomes]
rs9632615	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034605	chr7:41096638-41222426	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1028983	chr7:41165668-41635954	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41185200-41189600	Enhancers	HMEC	breast
2	chr7:41187000-41189800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr7:41187200-41189800	Enhancers	NHDF-Ad	bronchial
4	chr7:41187400-41189800	Enhancers	HSMMtube	muscle
5	chr7:41189200-41190000	Weak transcription	NHEK	skin
6	chr7:41189400-41222400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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