Variant report

Variant	rs29484
Chromosome Location	chr7:41189886-41189887
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:41183525..41185543-chr7:41189175..41191996,2	K562	blood:
2	chr7:41162891..41165369-chr7:41187985..41190735,2	MCF-7	breast:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10242681	0.85[CEU][hapmap]
rs10279346	0.82[EUR][1000 genomes]
rs12670349	0.85[CEU][hapmap]
rs12701875	0.82[CEU][hapmap]
rs13222193	0.86[CEU][hapmap]
rs13222281	0.88[CEU][hapmap]
rs13234888	0.86[CEU][hapmap]
rs1859692	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1859694	0.88[EUR][1000 genomes]
rs2108155	0.81[EUR][1000 genomes]
rs2190329	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28176	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28238	0.88[ASN][1000 genomes]
rs28314	0.89[ASN][1000 genomes]
rs29479	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs29480	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs29481	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs29483	0.89[ASN][1000 genomes]
rs29485	0.89[ASN][1000 genomes]
rs29486	0.89[ASN][1000 genomes]
rs29488	0.89[ASN][1000 genomes]
rs29489	0.89[ASN][1000 genomes]
rs29490	0.89[ASN][1000 genomes]
rs29492	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs29493	0.88[ASN][1000 genomes]
rs29494	0.84[ASN][1000 genomes]
rs29495	0.88[ASN][1000 genomes]
rs29496	0.88[ASN][1000 genomes]
rs29497	0.88[ASN][1000 genomes]
rs29498	0.88[ASN][1000 genomes]
rs29499	0.87[ASN][1000 genomes]
rs29500	0.88[ASN][1000 genomes]
rs29501	0.88[ASN][1000 genomes]
rs29502	0.88[ASN][1000 genomes]
rs29503	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs29504	0.88[ASN][1000 genomes]
rs29505	0.88[ASN][1000 genomes]
rs29506	0.88[ASN][1000 genomes]
rs29508	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs29509	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs29511	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs29512	0.83[ASN][1000 genomes]
rs29513	0.83[ASN][1000 genomes]
rs29514	0.83[ASN][1000 genomes]
rs29515	0.83[ASN][1000 genomes]
rs29516	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs29517	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs29518	0.83[ASN][1000 genomes]
rs29519	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs29521	0.83[ASN][1000 genomes]
rs29522	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs29523	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs29524	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs29525	0.83[ASN][1000 genomes]
rs29526	0.83[ASN][1000 genomes]
rs6945256	0.87[EUR][1000 genomes]
rs6947021	0.89[EUR][1000 genomes]
rs6951425	1.00[CHB][hapmap]
rs6958959	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6970635	0.80[EUR][1000 genomes]
rs6971616	0.82[EUR][1000 genomes]
rs6975061	0.86[EUR][1000 genomes]
rs6978132	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7384944	0.84[ASN][1000 genomes]
rs7796964	0.82[CEU][hapmap]
rs7799191	0.80[EUR][1000 genomes]
rs9632615	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034605	chr7:41096638-41222426	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1028983	chr7:41165668-41635954	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41189200-41190000	Weak transcription	NHEK	skin
2	chr7:41189400-41222400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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