Variant report

Variant	rs6945256
Chromosome Location	chr7:41169100-41169101
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10227446	0.93[ASN][1000 genomes]
rs10227663	0.92[ASN][1000 genomes]
rs10256962	0.93[ASN][1000 genomes]
rs10258940	0.92[ASN][1000 genomes]
rs10274211	0.92[ASN][1000 genomes]
rs10279346	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10755853	0.90[ASN][1000 genomes]
rs10755854	0.91[ASN][1000 genomes]
rs12670349	0.91[CEU][hapmap];0.87[ASN][1000 genomes]
rs12701863	0.89[ASN][1000 genomes]
rs12701864	0.89[ASN][1000 genomes]
rs13222193	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs13222281	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs13234888	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs13246656	0.85[ASN][1000 genomes]
rs1859692	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1859693	0.92[ASN][1000 genomes]
rs1859694	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2108155	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2108156	0.92[ASN][1000 genomes]
rs2108157	0.87[ASN][1000 genomes]
rs2190329	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2330001	0.90[ASN][1000 genomes]
rs28176	0.85[EUR][1000 genomes]
rs28880	0.92[ASN][1000 genomes]
rs29476	0.92[ASN][1000 genomes]
rs29477	0.92[ASN][1000 genomes]
rs29478	0.92[ASN][1000 genomes]
rs29479	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs29480	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs29481	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs29482	0.92[ASN][1000 genomes]
rs29484	0.87[EUR][1000 genomes]
rs29492	0.86[EUR][1000 genomes]
rs29503	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs29508	0.85[EUR][1000 genomes]
rs29509	0.85[EUR][1000 genomes]
rs29511	0.85[EUR][1000 genomes]
rs29516	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs29517	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs29519	0.84[EUR][1000 genomes]
rs29522	0.84[EUR][1000 genomes]
rs29524	0.84[EUR][1000 genomes]
rs4720399	0.92[ASN][1000 genomes]
rs4724027	1.00[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs4724028	0.90[ASN][1000 genomes]
rs4724029	0.94[ASN][1000 genomes]
rs6463004	0.91[ASN][1000 genomes]
rs6463005	0.92[ASN][1000 genomes]
rs6463006	0.94[ASN][1000 genomes]
rs6463007	0.94[ASN][1000 genomes]
rs6463008	0.85[ASN][1000 genomes]
rs6945901	0.94[ASN][1000 genomes]
rs6946898	0.94[ASN][1000 genomes]
rs6947021	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6958423	0.94[ASN][1000 genomes]
rs6958959	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6967416	0.90[ASN][1000 genomes]
rs6970635	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6971196	0.88[ASN][1000 genomes]
rs6971616	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6975061	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6978132	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7790556	0.93[ASN][1000 genomes]
rs7799191	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7805795	0.94[ASN][1000 genomes]
rs7809083	0.87[ASN][1000 genomes]
rs9632614	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034605	chr7:41096638-41222426	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1028983	chr7:41165668-41635954	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41129200-41175200	Weak transcription	Aorta	Aorta
2	chr7:41167200-41169400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:41167600-41169800	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr7:41167600-41174400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:41168200-41175600	Enhancers	Fetal Brain Male	brain
6	chr7:41168600-41170400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:41169000-41170200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:41169000-41170200	Enhancers	H9 Cell Line	embryonic stem cell
9	chr7:41169000-41170400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr7:41169000-41170600	Enhancers	Brain Germinal Matrix	brain
11	chr7:41169000-41175400	Enhancers	Fetal Brain Female	brain

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