Variant report

Variant	rs29517
Chromosome Location	chr7:41217601-41217602
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10227446	0.84[ASN][1000 genomes]
rs10227663	0.83[ASN][1000 genomes]
rs10256962	0.84[ASN][1000 genomes]
rs10258940	0.88[ASN][1000 genomes]
rs10274211	0.88[ASN][1000 genomes]
rs10279346	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10755853	0.83[ASN][1000 genomes]
rs10755854	0.83[ASN][1000 genomes]
rs12670349	0.81[ASN][1000 genomes]
rs12701863	0.81[ASN][1000 genomes]
rs12701864	0.82[ASN][1000 genomes]
rs13222193	0.82[ASN][1000 genomes]
rs13222281	0.82[ASN][1000 genomes]
rs13234888	0.81[ASN][1000 genomes]
rs1859692	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1859693	0.87[ASN][1000 genomes]
rs1859694	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2108155	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2108156	0.87[ASN][1000 genomes]
rs2108157	0.82[ASN][1000 genomes]
rs2190329	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2330001	0.83[ASN][1000 genomes]
rs28176	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28880	0.88[ASN][1000 genomes]
rs29476	0.88[ASN][1000 genomes]
rs29477	0.88[ASN][1000 genomes]
rs29478	0.88[ASN][1000 genomes]
rs29479	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs29480	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs29481	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs29482	0.88[ASN][1000 genomes]
rs29484	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs29492	0.90[EUR][1000 genomes]
rs29503	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs29508	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs29509	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs29511	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs29516	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs29519	0.93[EUR][1000 genomes]
rs29522	0.93[EUR][1000 genomes]
rs29523	0.88[EUR][1000 genomes]
rs29524	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4720399	0.88[ASN][1000 genomes]
rs4724028	0.83[ASN][1000 genomes]
rs4724029	0.85[ASN][1000 genomes]
rs6463004	0.85[ASN][1000 genomes]
rs6463005	0.83[ASN][1000 genomes]
rs6463006	0.85[ASN][1000 genomes]
rs6463007	0.85[ASN][1000 genomes]
rs6463008	0.80[ASN][1000 genomes]
rs6945256	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6945901	0.85[ASN][1000 genomes]
rs6946898	0.85[ASN][1000 genomes]
rs6947021	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6958423	0.85[ASN][1000 genomes]
rs6958959	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6967416	0.83[ASN][1000 genomes]
rs6970635	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6971196	0.82[ASN][1000 genomes]
rs6971616	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6975061	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6978132	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7790556	0.84[ASN][1000 genomes]
rs7799191	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7805795	0.85[ASN][1000 genomes]
rs9632614	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034605	chr7:41096638-41222426	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1028983	chr7:41165668-41635954	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41189400-41222400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:41215200-41226600	Weak transcription	Aorta	Aorta
3	chr7:41215400-41230400	Weak transcription	Pancreas	Pancrea
4	chr7:41217200-41218000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr7:41217400-41217800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr7:41217400-41217800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr7:41217400-41218600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr7:41217400-41218800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr7:41217600-41217800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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