Variant report

Variant	rs6946898
Chromosome Location	chr7:41164266-41164267
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:41146681..41148489-chr7:41163349..41165376,2	MCF-7	breast:
2	chr7:41162891..41165369-chr7:41187985..41190735,2	MCF-7	breast:
3	chr7:41162698..41164993-chr7:41169262..41172086,2	MCF-7	breast:

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10227446	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10227663	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10256962	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10258940	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10274211	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10279346	0.89[ASN][1000 genomes]
rs10755853	0.86[ASN][1000 genomes]
rs10755854	0.87[ASN][1000 genomes]
rs12670349	0.83[ASN][1000 genomes]
rs12701863	0.85[ASN][1000 genomes]
rs12701864	0.85[ASN][1000 genomes]
rs13222193	1.00[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs13222281	1.00[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs13234888	1.00[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs13246656	0.91[ASN][1000 genomes]
rs1859692	0.95[ASN][1000 genomes]
rs1859693	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1859694	0.93[ASN][1000 genomes]
rs2108155	0.89[ASN][1000 genomes]
rs2108156	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2108157	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2190329	0.91[ASN][1000 genomes]
rs2330001	0.86[ASN][1000 genomes]
rs28238	0.89[EUR][1000 genomes]
rs28314	0.89[EUR][1000 genomes]
rs28880	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs29476	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs29477	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs29478	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs29479	0.92[ASN][1000 genomes]
rs29480	0.92[ASN][1000 genomes]
rs29481	0.91[ASN][1000 genomes]
rs29482	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs29483	0.84[EUR][1000 genomes]
rs29485	0.90[EUR][1000 genomes]
rs29486	0.90[EUR][1000 genomes]
rs29488	0.90[EUR][1000 genomes]
rs29489	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs29490	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs29493	0.89[EUR][1000 genomes]
rs29494	0.88[EUR][1000 genomes]
rs29495	0.89[EUR][1000 genomes]
rs29496	0.89[EUR][1000 genomes]
rs29497	0.89[EUR][1000 genomes]
rs29498	0.89[EUR][1000 genomes]
rs29499	0.89[EUR][1000 genomes]
rs29500	0.89[EUR][1000 genomes]
rs29501	0.89[EUR][1000 genomes]
rs29502	0.89[EUR][1000 genomes]
rs29503	0.90[ASN][1000 genomes]
rs29504	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs29505	0.89[EUR][1000 genomes]
rs29506	0.89[EUR][1000 genomes]
rs29512	0.88[EUR][1000 genomes]
rs29513	0.88[EUR][1000 genomes]
rs29514	0.83[EUR][1000 genomes]
rs29515	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs29516	0.85[ASN][1000 genomes]
rs29517	0.85[ASN][1000 genomes]
rs29518	0.88[EUR][1000 genomes]
rs29521	0.87[EUR][1000 genomes]
rs29525	0.87[EUR][1000 genomes]
rs29526	0.87[EUR][1000 genomes]
rs4720399	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4724027	1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs4724028	0.86[ASN][1000 genomes]
rs4724029	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6463004	0.96[ASN][1000 genomes]
rs6463005	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6463006	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6463007	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6463008	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6945256	0.94[ASN][1000 genomes]
rs6945901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6947021	0.95[ASN][1000 genomes]
rs6951425	0.92[CEU][hapmap]
rs6958423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6958959	0.95[ASN][1000 genomes]
rs6967416	0.86[ASN][1000 genomes]
rs6970635	0.89[ASN][1000 genomes]
rs6971196	0.92[AFR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6971616	0.91[ASN][1000 genomes]
rs6975061	0.94[ASN][1000 genomes]
rs6978132	0.95[ASN][1000 genomes]
rs7790556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7799191	0.89[ASN][1000 genomes]
rs7805795	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7809083	0.83[ASN][1000 genomes]
rs9632614	0.94[AFR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034605	chr7:41096638-41222426	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41129200-41175200	Weak transcription	Aorta	Aorta
2	chr7:41161600-41164800	Weak transcription	NHDF-Ad	bronchial
3	chr7:41162800-41164600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:41162800-41164600	Weak transcription	HMEC	breast
5	chr7:41163200-41165600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:41163200-41167600	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr7:41163600-41164400	Weak transcription	NHEK	skin
8	chr7:41164200-41165800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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