Variant report

Variant	rs2108155
Chromosome Location	chr7:41149679-41149680
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:41148550..41150535-chr7:41726571..41728919,2	MCF-7	breast:
2	chr7:41093416..41095310-chr7:41148067..41150545,2	MCF-7	breast:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10227446	0.90[ASN][1000 genomes]
rs10227663	0.89[ASN][1000 genomes]
rs10242681	0.81[CEU][hapmap]
rs10256962	0.90[ASN][1000 genomes]
rs10258940	0.86[ASN][1000 genomes]
rs10274211	0.86[ASN][1000 genomes]
rs10279346	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10755853	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10755854	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12670349	0.96[CEU][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12701863	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12701864	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13222193	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13222281	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13234888	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13246656	0.92[ASN][1000 genomes]
rs1859692	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1859693	0.87[ASN][1000 genomes]
rs1859694	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2108156	0.87[ASN][1000 genomes]
rs2108157	0.81[ASN][1000 genomes]
rs2190329	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2330001	0.97[ASN][1000 genomes]
rs28176	0.81[EUR][1000 genomes]
rs28880	0.86[ASN][1000 genomes]
rs29476	0.86[ASN][1000 genomes]
rs29477	0.86[ASN][1000 genomes]
rs29478	0.86[ASN][1000 genomes]
rs29479	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs29480	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs29481	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs29482	0.86[ASN][1000 genomes]
rs29484	0.81[EUR][1000 genomes]
rs29492	0.82[EUR][1000 genomes]
rs29503	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs29508	0.80[EUR][1000 genomes]
rs29509	0.81[EUR][1000 genomes]
rs29511	0.81[EUR][1000 genomes]
rs29516	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs29517	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4720399	0.86[ASN][1000 genomes]
rs4724027	0.95[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs4724028	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4724029	0.89[ASN][1000 genomes]
rs6463004	0.92[ASN][1000 genomes]
rs6463005	0.90[ASN][1000 genomes]
rs6463006	0.89[ASN][1000 genomes]
rs6463007	0.89[ASN][1000 genomes]
rs6945256	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6945901	0.89[ASN][1000 genomes]
rs6946898	0.89[ASN][1000 genomes]
rs6947021	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6958423	0.89[ASN][1000 genomes]
rs6958959	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6967416	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6970635	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6971196	0.95[ASN][1000 genomes]
rs6971616	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6975061	0.91[AFR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6978132	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7790556	0.87[ASN][1000 genomes]
rs7799191	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7805795	0.89[ASN][1000 genomes]
rs7809083	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9632614	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034605	chr7:41096638-41222426	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41129200-41175200	Weak transcription	Aorta	Aorta
2	chr7:41146200-41151000	Enhancers	HMEC	breast
3	chr7:41147800-41151000	Enhancers	NHEK	skin
4	chr7:41147800-41151200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr7:41148000-41150800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:41148000-41153400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:41148200-41150200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr7:41148400-41152800	Weak transcription	NHDF-Ad	bronchial
9	chr7:41148400-41153400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:41148600-41149800	Weak transcription	HSMM	muscle
11	chr7:41149600-41153400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr7:41149600-41153400	Weak transcription	Placenta Amnion	Placenta Amnion

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