Variant report

Variant	rs29482
Chromosome Location	chr7:41188515-41188516
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:41162891..41165369-chr7:41187985..41190735,2	MCF-7	breast:

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10227446	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10227663	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10256962	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10258940	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10274211	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10279346	0.87[ASN][1000 genomes]
rs10755853	0.83[ASN][1000 genomes]
rs10755854	0.84[ASN][1000 genomes]
rs12670349	0.81[ASN][1000 genomes]
rs12701863	0.82[ASN][1000 genomes]
rs12701864	0.82[ASN][1000 genomes]
rs13222193	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs13222281	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs13234888	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs13246656	0.88[ASN][1000 genomes]
rs1859692	0.92[ASN][1000 genomes]
rs1859693	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1859694	0.94[ASN][1000 genomes]
rs2108155	0.86[ASN][1000 genomes]
rs2108156	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2108157	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2190329	0.93[ASN][1000 genomes]
rs2330001	0.83[ASN][1000 genomes]
rs28238	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28314	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28880	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs29476	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs29477	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs29478	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs29479	0.95[ASN][1000 genomes]
rs29480	0.95[ASN][1000 genomes]
rs29481	0.94[ASN][1000 genomes]
rs29483	0.86[EUR][1000 genomes]
rs29485	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs29486	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs29488	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs29489	0.93[EUR][1000 genomes]
rs29490	0.93[EUR][1000 genomes]
rs29493	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs29494	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs29495	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs29496	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs29497	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs29498	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs29499	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs29500	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs29501	0.92[EUR][1000 genomes]
rs29502	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs29503	0.93[ASN][1000 genomes]
rs29504	0.91[EUR][1000 genomes]
rs29505	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs29506	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs29512	0.91[EUR][1000 genomes]
rs29513	0.91[EUR][1000 genomes]
rs29514	0.85[EUR][1000 genomes]
rs29515	0.91[EUR][1000 genomes]
rs29516	0.88[ASN][1000 genomes]
rs29517	0.88[ASN][1000 genomes]
rs29518	0.91[EUR][1000 genomes]
rs29521	0.90[EUR][1000 genomes]
rs29525	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs29526	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4720399	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4724027	0.95[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs4724028	0.83[ASN][1000 genomes]
rs4724029	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6463004	0.93[ASN][1000 genomes]
rs6463005	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6463006	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6463007	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6463008	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6945256	0.92[ASN][1000 genomes]
rs6945901	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6946898	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6947021	0.92[ASN][1000 genomes]
rs6951425	0.96[CEU][hapmap]
rs6958423	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6958959	0.92[ASN][1000 genomes]
rs6967416	0.83[ASN][1000 genomes]
rs6970635	0.86[ASN][1000 genomes]
rs6971196	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6971616	0.89[ASN][1000 genomes]
rs6975061	0.91[ASN][1000 genomes]
rs6978132	0.92[ASN][1000 genomes]
rs7790556	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7799191	0.86[ASN][1000 genomes]
rs7805795	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7809083	0.81[ASN][1000 genomes]
rs9632614	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034605	chr7:41096638-41222426	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1028983	chr7:41165668-41635954	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41185200-41189600	Enhancers	HMEC	breast
2	chr7:41185600-41189000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr7:41186600-41189200	Enhancers	Hela-S3	cervix
4	chr7:41186600-41189400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:41186800-41189000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:41186800-41189000	Enhancers	Osteobl	bone
7	chr7:41187000-41189200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr7:41187000-41189800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr7:41187200-41188800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr7:41187200-41188800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr7:41187200-41189200	Enhancers	HSMM	muscle
12	chr7:41187200-41189400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr7:41187200-41189800	Enhancers	NHDF-Ad	bronchial
14	chr7:41187400-41188800	Enhancers	NH-A	brain
15	chr7:41187400-41189000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr7:41187400-41189800	Enhancers	HSMMtube	muscle
17	chr7:41187600-41188800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr7:41187800-41188800	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr7:41188000-41188800	Enhancers	HUVEC	blood vessel
20	chr7:41188200-41189200	Enhancers	NHEK	skin
21	chr7:41188400-41188600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr7:41188400-41189000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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