Variant report

Variant	rs10227446
Chromosome Location	chr7:41161268-41161269
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10227663	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10256962	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10258940	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10274211	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10279346	0.91[ASN][1000 genomes]
rs10755853	0.87[ASN][1000 genomes]
rs10755854	0.88[ASN][1000 genomes]
rs12670349	0.85[ASN][1000 genomes]
rs12701863	0.86[ASN][1000 genomes]
rs12701864	0.87[ASN][1000 genomes]
rs13222193	0.85[ASN][1000 genomes]
rs13222281	0.85[ASN][1000 genomes]
rs13234888	0.85[ASN][1000 genomes]
rs13246656	0.92[ASN][1000 genomes]
rs1859692	0.94[ASN][1000 genomes]
rs1859693	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1859694	0.91[ASN][1000 genomes]
rs2108155	0.90[ASN][1000 genomes]
rs2108156	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2108157	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2190329	0.90[ASN][1000 genomes]
rs2330001	0.87[ASN][1000 genomes]
rs28238	0.85[EUR][1000 genomes]
rs28314	0.85[EUR][1000 genomes]
rs28880	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs29476	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs29477	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs29478	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs29479	0.91[ASN][1000 genomes]
rs29480	0.91[ASN][1000 genomes]
rs29481	0.89[ASN][1000 genomes]
rs29482	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs29483	0.80[EUR][1000 genomes]
rs29485	0.86[EUR][1000 genomes]
rs29486	0.86[EUR][1000 genomes]
rs29488	0.86[EUR][1000 genomes]
rs29489	0.86[EUR][1000 genomes]
rs29490	0.86[EUR][1000 genomes]
rs29493	0.85[EUR][1000 genomes]
rs29494	0.84[EUR][1000 genomes]
rs29495	0.85[EUR][1000 genomes]
rs29496	0.85[EUR][1000 genomes]
rs29497	0.85[EUR][1000 genomes]
rs29498	0.85[EUR][1000 genomes]
rs29499	0.85[EUR][1000 genomes]
rs29500	0.85[EUR][1000 genomes]
rs29501	0.85[EUR][1000 genomes]
rs29502	0.85[EUR][1000 genomes]
rs29503	0.89[ASN][1000 genomes]
rs29504	0.84[EUR][1000 genomes]
rs29505	0.85[EUR][1000 genomes]
rs29506	0.85[EUR][1000 genomes]
rs29512	0.84[EUR][1000 genomes]
rs29513	0.84[EUR][1000 genomes]
rs29515	0.84[EUR][1000 genomes]
rs29516	0.84[ASN][1000 genomes]
rs29517	0.84[ASN][1000 genomes]
rs29518	0.84[EUR][1000 genomes]
rs29521	0.83[EUR][1000 genomes]
rs29525	0.83[EUR][1000 genomes]
rs29526	0.83[EUR][1000 genomes]
rs4720399	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4724027	0.90[ASN][1000 genomes]
rs4724028	0.87[ASN][1000 genomes]
rs4724029	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6463004	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6463005	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6463006	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6463007	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6463008	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6945256	0.93[ASN][1000 genomes]
rs6945901	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6946898	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6947021	0.94[ASN][1000 genomes]
rs6958423	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6958959	0.94[ASN][1000 genomes]
rs6967416	0.87[ASN][1000 genomes]
rs6970635	0.90[ASN][1000 genomes]
rs6971196	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6971616	0.93[ASN][1000 genomes]
rs6975061	0.95[ASN][1000 genomes]
rs6978132	0.94[ASN][1000 genomes]
rs7790556	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7799191	0.90[ASN][1000 genomes]
rs7805795	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7809083	0.85[ASN][1000 genomes]
rs9632614	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034605	chr7:41096638-41222426	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv971563	chr7:41154738-41162366	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41129200-41175200	Weak transcription	Aorta	Aorta
2	chr7:41154800-41161600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr7:41158800-41161400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:41160800-41161400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:41160800-41161600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:41160800-41161600	Enhancers	NHDF-Ad	bronchial
7	chr7:41160800-41162600	Enhancers	NHEK	skin
8	chr7:41160800-41162800	Enhancers	HMEC	breast

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