Variant report

Variant	rs6971616
Chromosome Location	chr7:41156809-41156810
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10227446	0.93[ASN][1000 genomes]
rs10227663	0.91[ASN][1000 genomes]
rs10256962	0.93[ASN][1000 genomes]
rs10258940	0.89[ASN][1000 genomes]
rs10274211	0.89[ASN][1000 genomes]
rs10279346	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10755853	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10755854	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12670349	0.96[CEU][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12701863	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12701864	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13222193	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13222281	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13234888	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13246656	0.89[ASN][1000 genomes]
rs1859692	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1859693	0.89[ASN][1000 genomes]
rs1859694	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2108155	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2108156	0.89[ASN][1000 genomes]
rs2108157	0.84[ASN][1000 genomes]
rs2190329	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2330001	0.94[ASN][1000 genomes]
rs28880	0.89[ASN][1000 genomes]
rs29476	0.89[ASN][1000 genomes]
rs29477	0.89[ASN][1000 genomes]
rs29478	0.89[ASN][1000 genomes]
rs29479	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs29480	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs29481	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs29482	0.89[ASN][1000 genomes]
rs29484	0.82[EUR][1000 genomes]
rs29492	0.81[EUR][1000 genomes]
rs29503	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs29516	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs29517	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4720399	0.89[ASN][1000 genomes]
rs4724027	1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs4724028	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4724029	0.91[ASN][1000 genomes]
rs6463004	0.95[ASN][1000 genomes]
rs6463005	0.93[ASN][1000 genomes]
rs6463006	0.91[ASN][1000 genomes]
rs6463007	0.91[ASN][1000 genomes]
rs6463008	0.82[ASN][1000 genomes]
rs6945256	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6945901	0.91[ASN][1000 genomes]
rs6946898	0.91[ASN][1000 genomes]
rs6947021	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6958423	0.91[ASN][1000 genomes]
rs6958959	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6967416	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6970635	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6971196	0.92[ASN][1000 genomes]
rs6975061	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6978132	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7790556	0.90[ASN][1000 genomes]
rs7799191	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7805795	0.91[ASN][1000 genomes]
rs7809083	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9632614	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034605	chr7:41096638-41222426	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv971563	chr7:41154738-41162366	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6971616	MYL7	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41129200-41175200	Weak transcription	Aorta	Aorta
2	chr7:41153400-41157200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr7:41153400-41158400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:41153400-41158400	Enhancers	HMEC	breast
5	chr7:41154800-41161600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr7:41155800-41157400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:41156600-41157000	Enhancers	NH-A	brain
8	chr7:41156600-41157000	Flanking Active TSS	NHEK	skin
9	chr7:41156800-41157200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links