Variant report

Variant	rs6975061
Chromosome Location	chr7:41162499-41162500
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10227446	0.95[ASN][1000 genomes]
rs10227663	0.94[ASN][1000 genomes]
rs10256962	0.95[ASN][1000 genomes]
rs10258940	0.91[ASN][1000 genomes]
rs10274211	0.91[ASN][1000 genomes]
rs10279346	0.92[AFR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10755853	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10755854	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12670349	0.93[CEU][hapmap];0.89[ASN][1000 genomes]
rs12701863	0.91[ASN][1000 genomes]
rs12701864	0.91[ASN][1000 genomes]
rs13222193	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs13222281	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs13234888	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs13246656	0.87[ASN][1000 genomes]
rs1859692	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1859693	0.92[ASN][1000 genomes]
rs1859694	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2108155	0.91[AFR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2108156	0.92[ASN][1000 genomes]
rs2108157	0.86[ASN][1000 genomes]
rs2190329	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2330001	0.92[ASN][1000 genomes]
rs28176	0.84[EUR][1000 genomes]
rs28880	0.91[ASN][1000 genomes]
rs29476	0.91[ASN][1000 genomes]
rs29477	0.91[ASN][1000 genomes]
rs29478	0.91[ASN][1000 genomes]
rs29479	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs29480	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs29481	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs29482	0.91[ASN][1000 genomes]
rs29484	0.86[EUR][1000 genomes]
rs29492	0.85[EUR][1000 genomes]
rs29503	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs29508	0.83[EUR][1000 genomes]
rs29509	0.84[EUR][1000 genomes]
rs29511	0.84[EUR][1000 genomes]
rs29516	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs29517	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs29519	0.82[EUR][1000 genomes]
rs29522	0.82[EUR][1000 genomes]
rs29524	0.82[EUR][1000 genomes]
rs4720399	0.91[ASN][1000 genomes]
rs4724027	1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs4724028	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4724029	0.94[ASN][1000 genomes]
rs6463004	0.93[ASN][1000 genomes]
rs6463005	0.94[ASN][1000 genomes]
rs6463006	0.94[ASN][1000 genomes]
rs6463007	0.94[ASN][1000 genomes]
rs6463008	0.84[ASN][1000 genomes]
rs6945256	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6945901	0.94[ASN][1000 genomes]
rs6946898	0.94[ASN][1000 genomes]
rs6947021	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6958423	0.94[ASN][1000 genomes]
rs6958959	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6967416	0.92[ASN][1000 genomes]
rs6970635	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6971196	0.90[ASN][1000 genomes]
rs6971616	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6978132	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7790556	0.92[ASN][1000 genomes]
rs7799191	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7805795	0.94[ASN][1000 genomes]
rs7809083	0.89[ASN][1000 genomes]
rs9632614	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034605	chr7:41096638-41222426	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41129200-41175200	Weak transcription	Aorta	Aorta
2	chr7:41160800-41162600	Enhancers	NHEK	skin
3	chr7:41160800-41162800	Enhancers	HMEC	breast
4	chr7:41161400-41162600	Enhancers	HSMMtube	muscle
5	chr7:41161400-41162800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr7:41161600-41164200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:41161600-41164800	Weak transcription	NHDF-Ad	bronchial
8	chr7:41162200-41162600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr7:41162200-41162600	Enhancers	Placenta Amnion	Placenta Amnion
10	chr7:41162200-41162800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:41162200-41163200	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr7:41162400-41162600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr7:41162400-41163000	Enhancers	Hela-S3	cervix
14	chr7:41162400-41163200	Enhancers	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links