Variant report

Variant	rs29519
Chromosome Location	chr7:41218332-41218333
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1859692	0.86[EUR][1000 genomes]
rs1859694	0.84[EUR][1000 genomes]
rs2190329	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs255008	0.83[ASN][1000 genomes]
rs255010	0.83[ASN][1000 genomes]
rs255013	0.80[ASN][1000 genomes]
rs255016	0.80[ASN][1000 genomes]
rs28176	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28238	0.86[ASN][1000 genomes]
rs28314	0.80[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs29479	0.90[EUR][1000 genomes]
rs29480	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs29481	0.90[EUR][1000 genomes]
rs29483	0.85[ASN][1000 genomes]
rs29484	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs29485	0.80[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs29486	0.80[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs29488	0.80[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs29489	0.85[ASN][1000 genomes]
rs29490	0.85[ASN][1000 genomes]
rs29492	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs29493	0.86[ASN][1000 genomes]
rs29494	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs29495	0.86[ASN][1000 genomes]
rs29496	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs29497	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs29498	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs29499	0.85[ASN][1000 genomes]
rs29500	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs29501	0.86[ASN][1000 genomes]
rs29502	0.86[ASN][1000 genomes]
rs29503	0.94[EUR][1000 genomes]
rs29504	0.86[ASN][1000 genomes]
rs29505	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs29506	0.86[ASN][1000 genomes]
rs29508	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs29509	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs29511	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs29512	0.91[ASN][1000 genomes]
rs29513	0.91[ASN][1000 genomes]
rs29514	0.91[ASN][1000 genomes]
rs29515	0.91[ASN][1000 genomes]
rs29516	0.92[EUR][1000 genomes]
rs29517	0.93[EUR][1000 genomes]
rs29518	0.91[ASN][1000 genomes]
rs29521	0.91[ASN][1000 genomes]
rs29522	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs29523	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs29524	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs29525	0.91[ASN][1000 genomes]
rs29526	0.91[ASN][1000 genomes]
rs29533	0.83[ASN][1000 genomes]
rs29534	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs29536	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs29538	0.83[ASN][1000 genomes]
rs6945256	0.84[EUR][1000 genomes]
rs6947021	0.86[EUR][1000 genomes]
rs6958959	0.86[EUR][1000 genomes]
rs6975061	0.82[EUR][1000 genomes]
rs6978132	0.86[EUR][1000 genomes]
rs7384944	0.80[ASN][1000 genomes]
rs9632615	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034605	chr7:41096638-41222426	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1028983	chr7:41165668-41635954	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41189400-41222400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:41215200-41226600	Weak transcription	Aorta	Aorta
3	chr7:41215400-41230400	Weak transcription	Pancreas	Pancrea
4	chr7:41217400-41218600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr7:41217400-41218800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr7:41218000-41218800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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