Variant report

Variant	rs9632615
Chromosome Location	chr7:41157293-41157294
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs28176	0.80[ASN][1000 genomes]
rs28238	0.93[ASN][1000 genomes]
rs28314	0.95[ASN][1000 genomes]
rs29483	0.95[ASN][1000 genomes]
rs29484	0.84[ASN][1000 genomes]
rs29485	0.95[ASN][1000 genomes]
rs29486	0.95[ASN][1000 genomes]
rs29488	0.95[ASN][1000 genomes]
rs29489	0.95[ASN][1000 genomes]
rs29490	0.95[ASN][1000 genomes]
rs29492	0.86[ASN][1000 genomes]
rs29493	0.93[ASN][1000 genomes]
rs29494	0.90[ASN][1000 genomes]
rs29495	0.93[ASN][1000 genomes]
rs29496	0.93[ASN][1000 genomes]
rs29497	0.93[ASN][1000 genomes]
rs29498	0.93[ASN][1000 genomes]
rs29499	0.92[ASN][1000 genomes]
rs29500	0.93[ASN][1000 genomes]
rs29501	0.93[ASN][1000 genomes]
rs29502	0.93[ASN][1000 genomes]
rs29504	0.93[ASN][1000 genomes]
rs29505	0.93[ASN][1000 genomes]
rs29506	0.93[ASN][1000 genomes]
rs29508	0.85[ASN][1000 genomes]
rs29509	0.85[ASN][1000 genomes]
rs29511	0.85[ASN][1000 genomes]
rs29512	0.88[ASN][1000 genomes]
rs29513	0.88[ASN][1000 genomes]
rs29514	0.88[ASN][1000 genomes]
rs29515	0.88[ASN][1000 genomes]
rs29518	0.88[ASN][1000 genomes]
rs29519	0.80[ASN][1000 genomes]
rs29521	0.88[ASN][1000 genomes]
rs29522	0.80[ASN][1000 genomes]
rs29525	0.88[ASN][1000 genomes]
rs29526	0.88[ASN][1000 genomes]
rs29530	0.81[ASN][1000 genomes]
rs29532	0.81[ASN][1000 genomes]
rs6951425	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs73089805	0.82[EUR][1000 genomes]
rs7384944	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034605	chr7:41096638-41222426	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv971563	chr7:41154738-41162366	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41129200-41175200	Weak transcription	Aorta	Aorta
2	chr7:41153400-41158400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:41153400-41158400	Enhancers	HMEC	breast
4	chr7:41154800-41161600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr7:41155800-41157400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:41157000-41158200	Enhancers	NHEK	skin
7	chr7:41157200-41157600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr7:41157200-41158400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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