Variant report

Variant	rs7796964
Chromosome Location	chr7:41285857-41285858
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:41285026..41287975-chr7:41289569..41291440,2	K562	blood:
2	chr7:41285682..41287554-chr7:41740636..41742871,2	MCF-7	breast:
3	chr7:41277967..41280193-chr7:41283626..41286439,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000122641	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10214988	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10214990	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10215332	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10215556	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10215561	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10215670	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10225564	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10225707	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10230756	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10233411	0.81[EUR][1000 genomes]
rs10238779	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10242681	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1024518	0.87[AMR][1000 genomes]
rs10246308	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10258437	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10281338	0.99[EUR][1000 genomes]
rs10951647	0.83[EUR][1000 genomes]
rs10951648	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11505532	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11505535	0.90[AMR][1000 genomes]
rs11760865	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11765437	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11766101	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11972895	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11976671	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12155372	1.00[EUR][1000 genomes]
rs12670349	0.82[CEU][hapmap]
rs12674340	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12701869	0.81[EUR][1000 genomes]
rs12701874	0.84[ASN][1000 genomes]
rs12701875	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12701876	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12701877	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12701879	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12701880	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12701882	0.89[EUR][1000 genomes]
rs13222193	0.82[CEU][hapmap]
rs13222281	0.81[CEU][hapmap]
rs13230373	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13234888	0.82[CEU][hapmap]
rs13238496	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1557929	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1557931	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2051868	0.88[AMR][1000 genomes]
rs2051870	0.87[AMR][1000 genomes]
rs2158558	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2189841	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35796717	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6944817	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6948410	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6955172	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6974692	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs756439	0.86[EUR][1000 genomes]
rs7789435	0.84[AMR][1000 genomes]
rs7812262	0.87[AMR][1000 genomes]
rs985821	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1028983	chr7:41165668-41635954	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv534465	chr7:41224437-41443498	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41265000-41296600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:41279200-41287200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr7:41279400-41287200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr7:41280400-41286200	Weak transcription	Hela-S3	cervix
5	chr7:41283200-41287200	Weak transcription	NHEK	skin
6	chr7:41283600-41287600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:41283600-41288000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:41284200-41286800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr7:41284200-41287000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr7:41284400-41287600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr7:41284600-41287000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr7:41285400-41288200	Enhancers	HMEC	breast
13	chr7:41285600-41288000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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