Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10155994	0.87[ASN][1000 genomes]
rs10214990	0.85[AMR][1000 genomes]
rs10225564	0.83[AMR][1000 genomes]
rs10242681	0.89[CEU][hapmap];0.81[MEX][hapmap];0.85[AMR][1000 genomes]
rs1024518	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10245608	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11765339	0.93[ASN][1000 genomes]
rs11765437	0.84[AMR][1000 genomes]
rs11766626	0.87[ASN][1000 genomes]
rs11979846	0.93[ASN][1000 genomes]
rs12701875	0.89[CEU][hapmap]
rs12701877	0.83[AMR][1000 genomes]
rs1557929	0.83[AMR][1000 genomes]
rs2051868	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2051870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2189841	0.81[AMR][1000 genomes]
rs2877014	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6951590	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6953774	0.90[ASN][1000 genomes]
rs6962962	0.91[ASN][1000 genomes]
rs6977875	0.91[ASN][1000 genomes]
rs7781291	0.90[ASN][1000 genomes]
rs7784685	0.87[ASN][1000 genomes]
rs7789435	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7796964	0.89[CEU][hapmap];0.87[AMR][1000 genomes]
rs985821	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1028983	chr7:41165668-41635954	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv534465	chr7:41224437-41443498	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7812262	NPC1L1	cis	parietal	SCAN
rs7812262	C7orf10	cis	parietal	SCAN
rs7812262	MYL7	cis	parietal	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41259400-41278400	Weak transcription	HSMM	muscle
2	chr7:41265000-41296600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:41271200-41273600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:41271800-41273000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:41272000-41272800	Weak transcription	Osteobl	bone
6	chr7:41272000-41274000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:41272000-41277200	Weak transcription	NHDF-Ad	bronchial
8	chr7:41272200-41273000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:41272200-41273800	Weak transcription	HMEC	breast
10	chr7:41272200-41274200	Weak transcription	NHEK	skin
11	chr7:41272200-41277000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr7:41272200-41277200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr7:41272200-41277200	Weak transcription	Hela-S3	cervix
14	chr7:41272200-41277800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr7:41272400-41277400	Weak transcription	Muscle Satellite Cultured Cells	--

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