Variant report

Variant	rs10245608
Chromosome Location	chr7:41241212-41241213
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10155994	0.83[ASN][1000 genomes]
rs1024518	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11766626	0.83[ASN][1000 genomes]
rs11975129	0.93[ASN][1000 genomes]
rs13222193	0.84[JPT][hapmap]
rs13222281	0.83[JPT][hapmap]
rs13234888	0.84[JPT][hapmap]
rs2051868	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2051870	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs255009	0.90[ASN][1000 genomes]
rs255018	0.91[ASN][1000 genomes]
rs2877014	0.87[ASN][1000 genomes]
rs29535	0.90[ASN][1000 genomes]
rs6951590	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6953774	0.87[ASN][1000 genomes]
rs6962962	0.89[ASN][1000 genomes]
rs6977875	0.89[ASN][1000 genomes]
rs7781291	0.90[ASN][1000 genomes]
rs7784685	0.83[ASN][1000 genomes]
rs7789435	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7812262	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1028983	chr7:41165668-41635954	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv534465	chr7:41224437-41443498	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41241000-41245800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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